{
    "type": "genome",
    "identifier": "GCA_001508455.1",
    "organism": "Methanocalculus sp. 52_23",
    "title": "Methanocalculus sp. 52_23",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Lawrence Berkeley National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001508455.1",
        "bioproject": "PRJNA278302",
        "biosample": "SAMN03445163",
        "wgs_master": "LGGJ00000000.1",
        "refseq_category": "na",
        "taxid": "1641382",
        "species_taxid": "1641382",
        "organism_name": "Methanocalculus sp. 52_23",
        "infraspecific_name": "",
        "isolate": "52_23",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/08",
        "asm_name": "ASM150845v1",
        "submitter": "Lawrence Berkeley National Lab",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/508/455/GCA_001508455.1_ASM150845v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-08",
    "dateModified": "2016-01-08",
    "datePublished": "2016-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanocalculus sp. 52_23"
        ],
        "sample_taxid": [
            "1641382"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Alaska, North Slope, Schrader Bluff formation"
        ],
        "sample_host_location_id": [],
        "data_size": "0.564 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.57,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1973787",
        "Number of Sequences": "224",
        "Longest Sequences (bp)": "51960",
        "N50 (bp)": "12444",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.9",
        "Number of CDSs": "1912",
        "Average Protein Length": "276.8",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanocalculus taiwanensis",
                "strain": "strain=P2F9704a",
                "accession": "GCA_024372745.1",
                "taxid": 106207,
                "species_taxid": 106207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8882,
                "matched_fragments": 395,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanocalculus chunghsingensis",
                "strain": "strain=K1F9705b",
                "accession": "GCA_018132105.1",
                "taxid": 156457,
                "species_taxid": 156457,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6364,
                "matched_fragments": 197,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanocalculus alkaliphilus",
                "strain": "strain=AMF2",
                "accession": "GCA_024170505.1",
                "taxid": 768730,
                "species_taxid": 768730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2937,
                "matched_fragments": 195,
                "total_fragments": 544,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.57,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013329165.1",
                "gtdb_species": "s__Methanocalculus sp9912u",
                "ani": 99.5367,
                "matched_fragments": 445,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002496395.1",
                "gtdb_species": "s__Methanocalculus sp002496395",
                "ani": 87.679,
                "matched_fragments": 394,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018132105.1",
                "gtdb_species": "s__Methanocalculus chunghsingensis",
                "ani": 78.6364,
                "matched_fragments": 197,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003838185.1",
                "gtdb_species": "s__Methanocalculus sp003838185",
                "ani": 78.5858,
                "matched_fragments": 207,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007130455.1",
                "gtdb_species": "s__Methanocalculus sp007130455",
                "ani": 77.4126,
                "matched_fragments": 149,
                "total_fragments": 544,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocalculus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.169,
        "cell_length": -0.169,
        "doubling_h": 1.147,
        "growth_tmp": 36.6,
        "optimum_tmp": 36.1,
        "optimum_ph": 7.55,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.6,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanocorpusculaceae",
        "g__Methanocalculus",
        "s__Methanocalculus sp9912u"
    ],
    "_genome_taxon": [
        "Methanocalculus",
        "sp.",
        "52_23",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanocorpusculaceae",
        "g__Methanocalculus",
        "s__Methanocalculus sp9912u",
        "Archaea",
        "Halobacteriota",
        "Methanomicrobia",
        "Methanomicrobiales",
        "Methanocorpusculaceae",
        "Methanocalculus",
        "Methanocalculus",
        "sp9912u"
    ],
    "_meo": [
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}