{
    "type": "genome",
    "identifier": "GCA_001508665.1",
    "organism": "Methanoculleus marisnigri",
    "title": "Methanoculleus marisnigri",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Lawrence Berkeley National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001508665.1",
        "bioproject": "PRJNA278302",
        "biosample": "SAMN03445185",
        "wgs_master": "LGHE00000000.1",
        "refseq_category": "na",
        "taxid": "2198",
        "species_taxid": "2198",
        "organism_name": "Methanoculleus marisnigri",
        "infraspecific_name": "",
        "isolate": "63_41",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/08",
        "asm_name": "ASM150866v1",
        "submitter": "Lawrence Berkeley National Lab",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/508/665/GCA_001508665.1_ASM150866v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-08",
    "dateModified": "2016-01-08",
    "datePublished": "2016-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanoculleus marisnigri"
        ],
        "sample_taxid": [
            "2198"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Alaska, North Slope, Schrader Bluff formation"
        ],
        "sample_host_location_id": [],
        "data_size": "0.517 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.74,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1825960",
        "Number of Sequences": "342",
        "Longest Sequences (bp)": "22053",
        "N50 (bp)": "6135",
        "Gap Ratio (%)": "0.004381",
        "GCcontent (%)": "62.1",
        "Number of CDSs": "1709",
        "Average Protein Length": "257.8",
        "Coding Ratio (%)": "72.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanoculleus marisnigri",
                "strain": "strain=JR1",
                "accession": "GCA_000015825.1",
                "taxid": 2198,
                "species_taxid": 2198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7584,
                "matched_fragments": 376,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus sediminis",
                "strain": "strain=S3Fa",
                "accession": "GCA_001017125.1",
                "taxid": 1550566,
                "species_taxid": 1550566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6971,
                "matched_fragments": 374,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus horonobensis",
                "strain": "strain=T10",
                "accession": "GCA_001602375.1",
                "taxid": 528314,
                "species_taxid": 528314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3497,
                "matched_fragments": 370,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=MG62",
                "accession": "GCA_019669965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1921,
                "matched_fragments": 361,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=JCM 10825",
                "accession": "GCA_001315965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3115,
                "matched_fragments": 320,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus bourgensis",
                "strain": "strain=MS2T",
                "accession": "GCA_000304355.2",
                "taxid": 83986,
                "species_taxid": 83986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5351,
                "matched_fragments": 358,
                "total_fragments": 432,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.74,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002503885.1",
                "gtdb_species": "s__Methanoculleus marisnigri_B",
                "ani": 99.2352,
                "matched_fragments": 415,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002839645.1",
                "gtdb_species": "s__Methanoculleus sp002839645",
                "ani": 93.8628,
                "matched_fragments": 380,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841385.1",
                "gtdb_species": "s__Methanoculleus sp016841385",
                "ani": 90.6282,
                "matched_fragments": 321,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841955.1",
                "gtdb_species": "s__Methanoculleus sp016841955",
                "ani": 89.53,
                "matched_fragments": 368,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018433835.1",
                "gtdb_species": "s__Methanoculleus sp018433835",
                "ani": 89.0008,
                "matched_fragments": 381,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002501655.1",
                "gtdb_species": "s__Methanoculleus sp002501655",
                "ani": 86.9099,
                "matched_fragments": 347,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000015825.1",
                "gtdb_species": "s__Methanoculleus marisnigri",
                "ani": 86.7585,
                "matched_fragments": 376,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002506585.1",
                "gtdb_species": "s__Methanoculleus sp002506585",
                "ani": 86.5093,
                "matched_fragments": 355,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.113,
        "cell_length": 0.113,
        "doubling_h": 0.82,
        "growth_tmp": 37.267,
        "optimum_tmp": 22.75,
        "optimum_ph": 6.4,
        "genome_size": 2478100.8,
        "gc_content": 62.1,
        "coding_genes": 2437.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus marisnigri_B"
    ],
    "_genome_taxon": [
        "Methanoculleus",
        "marisnigri",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus marisnigri_B",
        "Archaea",
        "Halobacteriota",
        "Methanomicrobia",
        "Methanomicrobiales",
        "Methanoculleaceae",
        "Methanoculleus",
        "Methanoculleus",
        "marisnigri",
        "B"
    ],
    "_meo": [
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}