{ "type": "genome", "identifier": "GCA_001513435.1", "organism": "Gammaproteobacteria bacterium DTU040", "title": "Gammaproteobacteria bacterium DTU040", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001513435.1", "bioproject": "PRJNA283298", "biosample": "SAMN03794759", "wgs_master": "LFTS00000000.1", "refseq_category": "na", "taxid": "1676152", "species_taxid": "1676152", "organism_name": "Gammaproteobacteria bacterium DTU040", "infraspecific_name": "", "isolate": "DTU040", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/01/12", "asm_name": "ASM151343v1", "submitter": "Technical University of Denmark", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/513/435/GCA_001513435.1_ASM151343v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-01-12", "dateModified": "2016-01-12", "datePublished": "2016-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium DTU040" ], "sample_taxid": [ "1676152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Kgs. 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiopseudomonas alkaliphila", "strain": "strain=B4199", "accession": "GCA_001267175.1", "taxid": 1697053, "species_taxid": 1697053, "relation_to_type": "type", "validated": true, "ani": 76.9204, "matched_fragments": 75, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.91, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_001513435.1", "gtdb_species": "s__Thiopseudomonas sp001513435", "ani": 100.0, "matched_fragments": 571, "total_fragments": 579, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Thiopseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": 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76.6751, "matched_fragments": 74, "total_fragments": 579, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116605.1", "gtdb_species": "s__Pseudomonas_E marincola", "ani": 76.4266, "matched_fragments": 50, "total_fragments": 579, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, 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