{ "type": "genome", "identifier": "GCA_001564255.1", "organism": "Natrialbaceae archaeon Tc-Br11_E2g1", "title": "Natrialbaceae archaeon Tc-Br11_E2g1", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001564255.1", "bioproject": "PRJNA286221", "biosample": "SAMN04125286", "wgs_master": "LKNC00000000.1", "refseq_category": "na", "taxid": "1729461", "species_taxid": "1729461", "organism_name": "Natrialbaceae archaeon Tc-Br11_E2g1", "infraspecific_name": "", "isolate": "Tc-Br11_E2g1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/19", "asm_name": "ASM156425v1", "submitter": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/564/255/GCA_001564255.1_ASM156425v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-19", "dateModified": "2016-02-19", "datePublished": "2016-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Natrialbaceae archaeon Tc-Br11_E2g1" ], "sample_taxid": [ "1729461" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Kulunda steppe" ], "sample_host_location_id": [], "data_size": "0.593 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.81, "contamination": 4.17, "strain_heterogeneity": 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"matched_fragments": 321, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma haloterrestris", "strain": "strain=DSM 13078", "accession": "GCA_900112205.1", "taxid": 148448, "species_taxid": 148448, "relation_to_type": "type", "validated": true, "ani": 79.3707, "matched_fragments": 331, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma lacisalsi", "strain": "strain=AJ5", "accession": "GCA_000336655.1", "taxid": 229731, "species_taxid": 229731, "relation_to_type": "type", "validated": true, "ani": 79.3696, "matched_fragments": 324, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema pellirubrum", "strain": "strain=DSM 15624", "accession": "GCA_000337635.1", "taxid": 69525, "species_taxid": 69525, "relation_to_type": "type", "validated": true, "ani": 79.3479, "matched_fragments": 315, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronococcus amylolyticus", "strain": "strain=DSM 10524", "accession": "GCA_000337675.1", "taxid": 44470, "species_taxid": 44470, "relation_to_type": "type", "validated": true, "ani": 79.222, "matched_fragments": 320, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronococcus jeotgali", "strain": "strain=DSM 18795", "accession": "GCA_000337695.1", "taxid": 413812, "species_taxid": 413812, "relation_to_type": "type", "validated": true, "ani": 79.2085, "matched_fragments": 304, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena hispanica", "strain": "strain=DSM 18328", "accession": "GCA_004217335.1", "taxid": 392421, "species_taxid": 392421, "relation_to_type": "type", "validated": true, "ani": 79.182, "matched_fragments": 270, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema salaciae", "strain": "strain=DSM 25055", "accession": "GCA_900110865.1", "taxid": 1186196, "species_taxid": 1186196, "relation_to_type": "type", "validated": true, "ani": 78.9235, "matched_fragments": 306, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronobacterium gregoryi", "strain": "strain=SP2", "accession": "GCA_900114025.1", "taxid": 44930, "species_taxid": 44930, "relation_to_type": "type", "validated": true, "ani": 78.6852, "matched_fragments": 296, "total_fragments": 607, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.81, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001564255.1", "gtdb_species": "s__Tc-Br11-E2g1 sp001564255", "ani": 100.0, "matched_fragments": 599, "total_fragments": 607, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Tc-Br11-E2g1", 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"N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.183, "cell_length": 0.241, "doubling_h": 0.32, "growth_tmp": 38.343, "optimum_tmp": 40.115, "optimum_ph": 8.066, "genome_size": 4175009.443, "gc_content": 62.385, "coding_genes": 3979.3, "rRNA16S_genes": 2.888, "tRNA_genes": 48.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.378, "range_salinity": 1.0, "facultative_respiration": 0.023, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.976, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.703, "coccus_cell_shape": 0.259, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.037, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Halobacteria", "o__Halobacteriales", "f__Natrialbaceae", "g__Tc-Br11-E2g1", "s__Tc-Br11-E2g1 sp001564255" ], "_genome_taxon": [ "Natrialbaceae", "archaeon", 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