{ "type": "genome", "identifier": "GCA_001577575.1", "organism": "Marinobacter sp. T13-3", "title": "Marinobacter sp. T13-3", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001577575.1", "bioproject": "PRJNA308326", "biosample": "SAMN04432754", "wgs_master": "LSRT00000000.1", "refseq_category": "na", "taxid": "1794906", "species_taxid": "1794906", "organism_name": "Marinobacter sp. T13-3", "infraspecific_name": "", "isolate": "T13-3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/29", "asm_name": "ASM157757v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/577/575/GCA_001577575.1_ASM157757v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-29", "dateModified": "2016-02-29", "datePublished": "2016-02-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter sp. T13-3" ], "sample_taxid": [ "1794906" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pennsylvania" ], "sample_host_location_id": [], "data_size": "1.469 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 18.63, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5129511", "Number of Sequences": "1265", "Longest Sequences (bp)": "70933", "N50 (bp)": "6275", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "4065", "Average Protein Length": "282.9", "Coding Ratio (%)": "67.3", "Number of rRNAs": "0", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 84.0955, "matched_fragments": 469, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 84.0152, "matched_fragments": 471, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 81.332, "matched_fragments": 358, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter oulmenensis", "strain": "strain=DSM 22359", "accession": "GCA_014201735.1", "taxid": 643747, "species_taxid": 643747, "relation_to_type": "type", "validated": true, "ani": 80.9385, "matched_fragments": 371, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.5641, "matched_fragments": 318, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 80.4157, "matched_fragments": 300, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.4115, "matched_fragments": 342, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 80.3701, "matched_fragments": 335, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 80.2276, "matched_fragments": 298, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 80.1694, "matched_fragments": 305, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 79.8266, "matched_fragments": 292, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.7622, "matched_fragments": 256, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 79.7363, "matched_fragments": 247, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.645, "matched_fragments": 270, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 79.6279, "matched_fragments": 234, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 79.5981, "matched_fragments": 277, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 79.276, "matched_fragments": 228, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 79.2374, "matched_fragments": 229, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 78.9762, "matched_fragments": 230, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halotolerans", "strain": "strain=NBRC 110910", "accession": "GCA_008795985.1", "taxid": 1569211, "species_taxid": 1569211, "relation_to_type": "type", "validated": true, "ani": 78.9427, "matched_fragments": 245, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 77.4846, "matched_fragments": 102, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.3109, "matched_fragments": 56, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU 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