{ "type": "genome", "identifier": "GCA_001577635.1", "organism": "Halomonadaceae bacterium T82-2", "title": "Halomonadaceae bacterium T82-2", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001577635.1", "bioproject": "PRJNA308326", "biosample": "SAMN04432558", "wgs_master": "LSBP00000000.1", "refseq_category": "na", "taxid": "1783518", "species_taxid": "1783518", "organism_name": "Halomonadaceae bacterium T82-2", "infraspecific_name": "", "isolate": "T82-2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/29", "asm_name": "ASM157763v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/577/635/GCA_001577635.1_ASM157763v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-29", "dateModified": "2016-02-29", "datePublished": "2016-02-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonadaceae bacterium T82-2" ], "sample_taxid": [ "1783518" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pennsylvania" ], "sample_host_location_id": [], "data_size": "0.938 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3421069", "Number of Sequences": "55", "Longest Sequences (bp)": "395674", "N50 (bp)": "105047", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "3112", "Average Protein Length": "327.9", "Coding Ratio (%)": "89.5", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 83.1465, "matched_fragments": 737, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 82.6029, "matched_fragments": 637, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 82.5755, "matched_fragments": 650, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 82.39, "matched_fragments": 657, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 82.2824, "matched_fragments": 625, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 82.2111, "matched_fragments": 667, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.1631, "matched_fragments": 634, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 82.1221, "matched_fragments": 594, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.1157, "matched_fragments": 627, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 82.0636, "matched_fragments": 638, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 81.9192, "matched_fragments": 692, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 81.8754, "matched_fragments": 666, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 81.846, "matched_fragments": 609, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 81.7591, "matched_fragments": 667, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 81.6016, "matched_fragments": 640, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 81.5209, "matched_fragments": 596, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 80.9765, "matched_fragments": 647, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas antri", "strain": "strain=Y3S6", "accession": "GCA_019430905.1", "taxid": 2846777, "species_taxid": 2846777, "relation_to_type": "type", "validated": true, "ani": 80.7921, "matched_fragments": 568, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 80.7494, "matched_fragments": 599, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.7019, "matched_fragments": 568, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001577635.1", "gtdb_species": "s__Halomonas_C sp001577635", "ani": 100.0, "matched_fragments": 1109, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010993675.1", "gtdb_species": "s__Halomonas_C sp010993675", "ani": 94.6012, "matched_fragments": 990, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004117855.1", "gtdb_species": "s__Halomonas_C coralii", "ani": 85.9405, "matched_fragments": 886, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900961225.1", "gtdb_species": "s__Halomonas_C sp900961225", "ani": 83.41, "matched_fragments": 788, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000731955.1", "gtdb_species": "s__Halomonas_C zincidurans", "ani": 83.1637, "matched_fragments": 736, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000265245.1", "gtdb_species": "s__Halomonas smyrnensis", "ani": 82.6197, "matched_fragments": 635, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003056305.1", "gtdb_species": "s__Halomonas denitrificans", "ani": 82.4024, "matched_fragments": 656, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104135.1", "gtdb_species": "s__Halomonas shengliensis", "ani": 82.27, "matched_fragments": 627, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.66", "min_intra_species_ani": "95.66", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009363755.1", "gtdb_species": "s__Halomonas sp009363755", "ani": 82.2491, "matched_fragments": 633, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004363555.1", "gtdb_species": "s__Halomonas ventosae", "ani": 81.8797, "matched_fragments": 665, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003966155.1", "gtdb_species": "s__Halomonas nitroreducens", "ani": 81.7618, "matched_fragments": 666, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.14, "cell_length": 0.232, "doubling_h": 0.404, "growth_tmp": 30.188, "optimum_tmp": 31.973, "optimum_ph": 7.537, "genome_size": 3700783.641, "gc_content": 56.506, "coding_genes": 2835.79, "rRNA16S_genes": 3.692, "tRNA_genes": 59.212, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.833, "range_salinity": 1.0, "facultative_respiration": 0.157, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.842, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.958, "coccus_cell_shape": 0.013, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.027, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Halomonadaceae", "g__Modicisalibacter", "s__Modicisalibacter sp001577635" ], "_genome_taxon": [ "Halomonadaceae", "bacterium", "T82-2", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Halomonadaceae", "g__Modicisalibacter", "s__Modicisalibacter sp001577635", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Halomonadaceae", "Modicisalibacter", "Modicisalibacter", "sp001577635" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }