{ "type": "genome", "identifier": "GCA_001603255.1", "organism": "Methanomicrobiales archaeon Methan_07", "title": "Methanomicrobiales archaeon Methan_07", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001603255.1", "bioproject": "PRJNA284316", "biosample": "SAMN03837489", "wgs_master": "LUYK00000000.1", "refseq_category": "na", "taxid": "1674804", "species_taxid": "1674804", "organism_name": "Methanomicrobiales archaeon Methan_07", "infraspecific_name": "", "isolate": "Methan_07", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/30", "asm_name": "ASM160325v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/603/255/GCA_001603255.1_ASM160325v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-30", "dateModified": "2016-03-30", "datePublished": "2016-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanomicrobiales archaeon Methan_07" ], "sample_taxid": [ "1674804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 19.32, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1913135", "Number of Sequences": "414", "Longest Sequences (bp)": "30366", "N50 (bp)": "6314", "Gap Ratio (%)": "0.103338", "GCcontent (%)": "61.6", "Number of CDSs": "1607", "Average Protein Length": "266.8", "Coding Ratio (%)": "67.2", "Number of rRNAs": "3", "Number of tRNAs": "26", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanoculleus chikugoensis", "strain": "strain=MG62", "accession": "GCA_019669965.1", "taxid": 118126, "species_taxid": 118126, "relation_to_type": "type", "validated": true, "ani": 84.4416, "matched_fragments": 294, "total_fragments": 417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus sediminis", "strain": "strain=S3Fa", "accession": "GCA_001017125.1", "taxid": 1550566, "species_taxid": 1550566, "relation_to_type": "type", "validated": true, "ani": 84.1955, "matched_fragments": 294, "total_fragments": 417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus marisnigri", "strain": "strain=JR1", "accession": "GCA_000015825.1", "taxid": 2198, "species_taxid": 2198, "relation_to_type": "type", "validated": true, "ani": 84.1663, "matched_fragments": 287, "total_fragments": 417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus horonobensis", "strain": "strain=T10", "accession": "GCA_001602375.1", "taxid": 528314, "species_taxid": 528314, "relation_to_type": "type", "validated": true, "ani": 83.9722, "matched_fragments": 290, "total_fragments": 417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus bourgensis", "strain": "strain=MS2T", "accession": "GCA_000304355.2", "taxid": 83986, "species_taxid": 83986, "relation_to_type": "type", "validated": true, "ani": 83.4211, "matched_fragments": 283, "total_fragments": 417, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 19.32, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001896715.1", "gtdb_species": "s__Methanoculleus sp001896715", "ani": 98.0885, "matched_fragments": 270, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.67", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_019136335.1", "gtdb_species": "s__Methanoculleus sp019136335", "ani": 88.3301, "matched_fragments": 236, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016841955.1", "gtdb_species": "s__Methanoculleus sp016841955", "ani": 84.6828, "matched_fragments": 270, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018433835.1", "gtdb_species": "s__Methanoculleus sp018433835", "ani": 84.5266, "matched_fragments": 299, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016841385.1", "gtdb_species": "s__Methanoculleus sp016841385", "ani": 84.4279, "matched_fragments": 240, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001017125.1", "gtdb_species": "s__Methanoculleus sediminis", "ani": 84.1629, "matched_fragments": 295, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002503885.1", "gtdb_species": "s__Methanoculleus marisnigri_B", "ani": 83.9918, "matched_fragments": 285, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_017874195.1", "gtdb_species": "s__Methanoculleus hydrogenitrophicus", "ani": 83.573, "matched_fragments": 292, "total_fragments": 417, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.086, "cell_length": 0.11, "doubling_h": 1.123, "growth_tmp": 35.61, "optimum_tmp": 35.621, "optimum_ph": 6.957, "genome_size": 2358795.323, "gc_content": 53.366, "coding_genes": 2554.773, "rRNA16S_genes": 2.142, "tRNA_genes": 49.618, "gram_stain": 0.027, "sporulation": 0.0, "motility": 0.285, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.117, "coccus_cell_shape": 0.823, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.029, "spiral_cell_shape": 0.029 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanoculleaceae", "g__Methanoculleus", "s__Methanoculleus sp001896715" ], "_genome_taxon": [ "Methanomicrobiales", "archaeon", "Methan_07", "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanoculleaceae", "g__Methanoculleus", "s__Methanoculleus sp001896715", "Archaea", "Halobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanoculleaceae", "Methanoculleus", "Methanoculleus", "sp001896715" ], "_meo": [ { "id": "MEO_0001192", "label": "anaerobic digester" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }