{ "type": "genome", "identifier": "GCA_001604115.1", "organism": "Clostridiales bacterium Firm_12", "title": "Clostridiales bacterium Firm_12", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001604115.1", "bioproject": "PRJNA284316", "biosample": "SAMN03837548", "wgs_master": "LVAR00000000.1", "refseq_category": "na", "taxid": "1674850", "species_taxid": "1674850", "organism_name": "Clostridiales bacterium Firm_12", "infraspecific_name": "", "isolate": "Firm_12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/30", "asm_name": "ASM160411v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/604/115/GCA_001604115.1_ASM160411v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-30", "dateModified": "2016-03-30", "datePublished": "2016-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridiales bacterium Firm_12" ], "sample_taxid": [ "1674850" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 6.06, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1615870", "Number of Sequences": "143", "Longest Sequences (bp)": "62523", "N50 (bp)": "16210", "Gap Ratio (%)": "0.012377", "GCcontent (%)": "61.2", "Number of CDSs": "1263", "Average Protein Length": "332.2", "Coding Ratio (%)": "77.9", "Number of rRNAs": "0", "Number of tRNAs": "16", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 79.17, "contamination": 6.06, "strain_heterogeneity": 16.67 }, "gtdb_result": [ { "accession": "GCA_001604115.1", "gtdb_species": "s__Limiplasma sp001604115", "ani": 100.0, "matched_fragments": 452, "total_fragments": 459, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Limiplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001604105.1", "gtdb_species": "s__Limiplasma sp001604105", "ani": 79.955, 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