{
    "type": "genome",
    "identifier": "GCA_001604645.1",
    "organism": "Verrucomicrobia bacterium Verruco_05",
    "title": "Verrucomicrobia bacterium Verruco_05",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001604645.1",
        "bioproject": "PRJNA284316",
        "biosample": "SAMN03837582",
        "wgs_master": "LVBZ00000000.1",
        "refseq_category": "na",
        "taxid": "1674917",
        "species_taxid": "1674917",
        "organism_name": "Verrucomicrobia bacterium Verruco_05",
        "infraspecific_name": "",
        "isolate": "Verruco_05",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/30",
        "asm_name": "ASM160464v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/604/645/GCA_001604645.1_ASM160464v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-30",
    "dateModified": "2016-03-30",
    "datePublished": "2016-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobia bacterium Verruco_05"
        ],
        "sample_taxid": [
            "1674917"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.658 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2353161",
        "Number of Sequences": "216",
        "Longest Sequences (bp)": "55746",
        "N50 (bp)": "18828",
        "Gap Ratio (%)": "0.008202",
        "GCcontent (%)": "65.2",
        "Number of CDSs": "1727",
        "Average Protein Length": "357.4",
        "Coding Ratio (%)": "78.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 50.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_012517205.1",
                "gtdb_species": "s__UBA8199 sp003527065",
                "ani": 99.5153,
                "matched_fragments": 574,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__UBA8199",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903922605.1",
                "gtdb_species": "s__CAIVQB01 sp903922605",
                "ani": 75.817,
                "matched_fragments": 56,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA9464;g__CAIVQB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903916195.1",
                "gtdb_species": "s__CAIVQB01 sp903916195",
                "ani": 75.5057,
                "matched_fragments": 51,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA9464;g__CAIVQB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4730450.0,
        "gc_content": 62.2,
        "coding_genes": 3761.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA8199",
        "g__UBA8199",
        "s__UBA8199 sp003527065"
    ],
    "_genome_taxon": [
        "Verrucomicrobia",
        "bacterium",
        "Verruco_05",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA8199",
        "g__UBA8199",
        "s__UBA8199 sp003527065",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "UBA8199",
        "UBA8199",
        "UBA8199",
        "sp003527065"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}