{
    "type": "genome",
    "identifier": "GCA_001628085.1",
    "organism": "Sphingopyxis sp. REDSEA-S40_B6",
    "title": "Sphingopyxis sp. REDSEA-S40_B6",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "King Abdullah University of Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001628085.1",
        "bioproject": "PRJNA289734",
        "biosample": "SAMN04534662",
        "wgs_master": "LURH00000000.1",
        "refseq_category": "na",
        "taxid": "1811573",
        "species_taxid": "1811573",
        "organism_name": "Sphingopyxis sp. REDSEA-S40_B6",
        "infraspecific_name": "",
        "isolate": "REDSEA-S40_B6",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/22",
        "asm_name": "ASM162808v1",
        "submitter": "King Abdullah University of Science and Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/628/085/GCA_001628085.1_ASM162808v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-22",
    "dateModified": "2016-04-22",
    "datePublished": "2016-04-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingopyxis sp. REDSEA-S40_B6"
        ],
        "sample_taxid": [
            "1811573"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Saudi Arabia: Red Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.949 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3450103",
        "Number of Sequences": "73",
        "Longest Sequences (bp)": "278174",
        "N50 (bp)": "75059",
        "Gap Ratio (%)": "0.018289",
        "GCcontent (%)": "65.2",
        "Number of CDSs": "3346",
        "Average Protein Length": "306.6",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_900177755.1",
                "taxid": 429001,
                "species_taxid": 33052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9516,
                "matched_fragments": 939,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. ummariensis",
                "strain": "strain=DSM 24316",
                "accession": "GCA_002374275.1",
                "taxid": 429001,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9445,
                "matched_fragments": 932,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. terrae",
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                "accession": "GCA_001598815.1",
                "taxid": 2448440,
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                "validated": true,
                "ani": 96.8122,
                "matched_fragments": 950,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. terrae",
                "strain": "strain=203-1",
                "accession": "GCA_001610975.1",
                "taxid": 2448440,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7472,
                "matched_fragments": 962,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingopyxis soli",
                "strain": "strain=BL03",
                "accession": "GCA_018682675.1",
                "taxid": 592051,
                "species_taxid": 592051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6686,
                "matched_fragments": 762,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis indica",
                "strain": "strain=DS15",
                "accession": "GCA_900188185.1",
                "taxid": 436663,
                "species_taxid": 436663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0618,
                "matched_fragments": 751,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0761,
                "matched_fragments": 358,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas alpina",
                "strain": "strain=DSM 22537",
                "accession": "GCA_025370095.1",
                "taxid": 653931,
                "species_taxid": 653931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.765,
                "matched_fragments": 327,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas psychrotolerans",
                "strain": "strain=Cra20",
                "accession": "GCA_002796605.1",
                "taxid": 1327635,
                "species_taxid": 1327635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5043,
                "matched_fragments": 338,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aracearum",
                "strain": "strain=WZY 27",
                "accession": "GCA_003345355.1",
                "taxid": 2283317,
                "species_taxid": 2283317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3924,
                "matched_fragments": 282,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas segetis",
                "strain": "strain=YJ09",
                "accession": "GCA_009720245.1",
                "taxid": 1104779,
                "species_taxid": 1104779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2659,
                "matched_fragments": 179,
                "total_fragments": 1116,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001598815.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "95.58",
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                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 19,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000756385.1",
                "gtdb_species": "s__Sphingopyxis sp000756385",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004795895.1",
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                "matched_fragments": 806,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018682675.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017309275.1",
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                "matched_fragments": 800,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001468395.1",
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                "matched_fragments": 797,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
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            {
                "accession": "GCF_002277025.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_900078365.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_013410105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
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                "mean_intra_species_ani": "99.44",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.437,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.909,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__Sphingomonadaceae",
        "g__Sphingopyxis",
        "s__Sphingopyxis terrae"
    ],
    "_genome_taxon": [
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        "REDSEA-S40_B6",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingopyxis",
        "s__Sphingopyxis terrae",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Sphingomonadales",
        "Sphingomonadaceae",
        "Sphingopyxis",
        "Sphingopyxis",
        "terrae"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}