{ "type": "genome", "identifier": "GCA_001628115.1", "organism": "Sphingopyxis sp. REDSEA-S29_B3", "title": "Sphingopyxis sp. REDSEA-S29_B3", "description": "unverified source organism; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "King Abdullah University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001628115.1", "bioproject": "PRJNA289734", "biosample": "SAMN04534659", "wgs_master": "LURE00000000.1", "refseq_category": "na", "taxid": "1811570", "species_taxid": "1811570", "organism_name": "Sphingopyxis sp. REDSEA-S29_B3", "infraspecific_name": "", "isolate": "REDSEA-S29_B3", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/22", "asm_name": "ASM162811v1", "submitter": "King Abdullah University of Science and Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/628/115/GCA_001628115.1_ASM162811v1", "excluded_from_refseq": "unverified source organism; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-22", "dateModified": "2016-04-22", "datePublished": "2016-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis sp. REDSEA-S29_B3" ], "sample_taxid": [ "1811570" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Red Sea" ], "sample_host_location_id": [], "data_size": "0.951 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3463553", "Number of Sequences": "43", "Longest Sequences (bp)": "415886", "N50 (bp)": "107216", "Gap Ratio (%)": "0.023502", "GCcontent (%)": "65.2", "Number of CDSs": "3414", "Average Protein Length": "305.2", "Coding Ratio (%)": "90.2", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis terrae subsp. 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