{ "type": "genome", "identifier": "GCA_001657385.1", "organism": "Parvularcula sp. BBD 1991-13", "title": "Parvularcula sp. BBD 1991-13", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Michigan", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001657385.1", "bioproject": "PRJNA281489", "biosample": "SAMN04939327", "wgs_master": "LYSZ00000000.1", "refseq_category": "na", "taxid": "1852618", "species_taxid": "1852618", "organism_name": "Parvularcula sp. BBD 1991-13", "infraspecific_name": "", "isolate": "BBD 1991-13", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/06/03", "asm_name": "ASM165738v1", "submitter": "University of Michigan", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/657/385/GCA_001657385.1_ASM165738v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-06-03", "dateModified": "2016-06-03", "datePublished": "2016-06-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Parvularcula sp. BBD 1991-13" ], "sample_taxid": [ "1852618" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4240011", "Number of Sequences": "36", "Longest Sequences (bp)": "755511", "N50 (bp)": "407854", "Gap Ratio (%)": "0.002665", "GCcontent (%)": "64.5", "Number of CDSs": "3772", "Average Protein Length": "324.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinicaulis flavus", "strain": "strain=SY-3-19", "accession": 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1566827, "species_taxid": 1566827, "relation_to_type": "type", "validated": true, "ani": 77.346, "matched_fragments": 186, "total_fragments": 1395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus luteolus", "strain": "strain=CGMCC 1.14984", "accession": "GCA_014640455.1", "taxid": 1566827, "species_taxid": 1566827, "relation_to_type": "type", "validated": true, "ani": 77.329, "matched_fragments": 186, "total_fragments": 1395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_022559625.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 77.1937, "matched_fragments": 195, "total_fragments": 1395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_014534785.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", 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