{ "type": "genome", "identifier": "GCA_001689725.1", "organism": "Candidatus Erwinia dacicola", "title": "Candidatus Erwinia dacicola", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Liverpool", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001689725.1", "bioproject": "PRJNA326914", "biosample": "SAMN05368316", "wgs_master": "MAZB00000000.1", "refseq_category": "na", "taxid": "252393", "species_taxid": "252393", "organism_name": "Candidatus Erwinia dacicola", "infraspecific_name": "", "isolate": "Erw_SC", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/07/20", "asm_name": "ASM168972v1", "submitter": "University of Liverpool", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/689/725/GCA_001689725.1_ASM168972v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-07-20", "dateModified": "2016-07-20", "datePublished": "2016-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Erwinia dacicola" ], "sample_taxid": [ "252393" ], "sample_host_organism": [ "Bactrocera oleae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.605 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2132378", "Number of Sequences": "333", "Longest Sequences (bp)": "37608", "N50 (bp)": "9998", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.5", "Number of CDSs": "2202", "Average Protein Length": "233.8", "Coding Ratio (%)": "72.4", "Number of rRNAs": "3", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 92.1633, "matched_fragments": 429, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=JCM 21238", "accession": "GCA_014773485.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 92.0744, "matched_fragments": 433, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia persicina", "strain": "strain=NBRC 102418", "accession": "GCA_001571305.1", "taxid": 55211, 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