{ "type": "genome", "identifier": "GCA_001751115.2", "organism": "Desulfuromonadales bacterium C00003096", "title": "Desulfuromonadales bacterium C00003096", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "California Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001751115.2", "bioproject": "PRJNA290197", "biosample": "SAMN05301629", "wgs_master": "MAXO00000000.1", "refseq_category": "na", "taxid": "1869311", "species_taxid": "1869311", "organism_name": "Desulfuromonadales bacterium C00003096", "infraspecific_name": "", "isolate": "C00003096", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2016/10/03", "asm_name": "ASM175111v2", "submitter": "California Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/751/115/GCA_001751115.2_ASM175111v2", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-03", "dateModified": "2016-10-03", "datePublished": "2016-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfuromonadales bacterium C00003096" ], "sample_taxid": [ "1869311" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Hydrate Ridge" ], "sample_host_location_id": [], "data_size": "0.976 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.1, "contamination": 11.55, "strain_heterogeneity": 36.36, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3374027", "Number of Sequences": "775", "Longest Sequences (bp)": "29753", "N50 (bp)": "4512", "Gap Ratio (%)": "0.533220", "GCcontent (%)": "50.8", "Number of CDSs": "2649", "Average Protein Length": "262.1", "Coding Ratio (%)": "61.7", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Syntrophotalea acetylenivorans", "strain": "strain=SFB93", "accession": "GCA_001887775.1", "taxid": 1842532, "species_taxid": 1842532, "relation_to_type": "type", "validated": true, "ani": 81.8471, "matched_fragments": 329, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 77.0075, "matched_fragments": 72, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 76.7728, "matched_fragments": 51, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "", "accession": "GCA_900111775.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.7308, "matched_fragments": 62, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter halelectricus", "strain": "strain=SAP-1", "accession": "GCA_025263685.1", "taxid": 2847045, "species_taxid": 2847045, "relation_to_type": "type", "validated": true, "ani": 76.7257, "matched_fragments": 58, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.6939, "matched_fragments": 63, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea carbinolica", "strain": "strain=DSM 2380", "accession": "GCA_000012885.1", "taxid": 19, "species_taxid": 19, "relation_to_type": "type", "validated": true, "ani": 76.6177, "matched_fragments": 78, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas soudanensis", "strain": "strain=WTL", "accession": "GCA_001278055.1", "taxid": 1603606, "species_taxid": 1603606, "relation_to_type": "type", "validated": true, "ani": 76.6111, "matched_fragments": 52, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter hydrogeniphilus", "strain": "strain=EPR-M", "accession": "GCA_002093115.1", "taxid": 1969733, "species_taxid": 1969733, "relation_to_type": "type", "validated": true, "ani": 76.5293, "matched_fragments": 51, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.1, "contamination": 11.55, "strain_heterogeneity": 36.36 }, "gtdb_result": [ { "accession": "GCA_003194495.1", "gtdb_species": "s__UBA3076 sp003194495", "ani": 87.3288, "matched_fragments": 50, "total_fragments": 694, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales;f__UBA3076;g__UBA3076", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001751225.1", "gtdb_species": "s__Syntrophotalea_A sp001751225", "ani": 85.2367, "matched_fragments": 278, "total_fragments": 694, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__Syntrophotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013619105.1", "gtdb_species": "s__Syntrophotalea_A sp013619105", "ani": 84.9737, "matched_fragments": 353, "total_fragments": 694, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__Syntrophotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001887775.1", "gtdb_species": "s__Syntrophotalea_A acetylenivorans", "ani": 81.8471, "matched_fragments": 329, 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"d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__SLLR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000012885.1", "gtdb_species": "s__Syntrophotalea carbinolica", "ani": 76.6177, "matched_fragments": 78, "total_fragments": 694, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__Syntrophotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.313, "cell_length": 0.202, "doubling_h": 0.943, "growth_tmp": 29.222, "optimum_tmp": 27.813, "optimum_ph": 7.044, 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"Syntrophotaleaceae", "Syntrophotalea", "A", "s", "", "" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }