{
    "type": "genome",
    "identifier": "GCA_001751155.1",
    "organism": "Desulfuromonadales bacterium C00003068",
    "title": "Desulfuromonadales bacterium C00003068",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "California Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001751155.1",
        "bioproject": "PRJNA290197",
        "biosample": "SAMN05301632",
        "wgs_master": "MAXR00000000.1",
        "refseq_category": "na",
        "taxid": "1869312",
        "species_taxid": "1869312",
        "organism_name": "Desulfuromonadales bacterium C00003068",
        "infraspecific_name": "",
        "isolate": "C00003068",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/03",
        "asm_name": "ASM175115v1",
        "submitter": "California Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/751/155/GCA_001751155.1_ASM175115v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-03",
    "dateModified": "2016-10-03",
    "datePublished": "2016-10-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfuromonadales bacterium C00003068"
        ],
        "sample_taxid": [
            "1869312"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Hydrate Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "0.792 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.35,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2738577",
        "Number of Sequences": "461",
        "Longest Sequences (bp)": "36634",
        "N50 (bp)": "7370",
        "Gap Ratio (%)": "0.328528",
        "GCcontent (%)": "46.3",
        "Number of CDSs": "2196",
        "Average Protein Length": "287.5",
        "Coding Ratio (%)": "69.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfuromonas acetoxidans",
                "strain": "strain=DSM 684",
                "accession": "GCA_000167355.1",
                "taxid": 891,
                "species_taxid": 891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.803,
                "matched_fragments": 83,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.35,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001751155.1",
                "gtdb_species": "s__Desulfuromonas sp001751155",
                "ani": 99.9999,
                "matched_fragments": 663,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Desulfuromonadaceae;g__Desulfuromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002084665.1",
                "gtdb_species": "s__Desulfuromonas sp002084665",
                "ani": 87.5195,
                "matched_fragments": 382,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Desulfuromonadaceae;g__Desulfuromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002869685.1",
                "gtdb_species": "s__Desulfuromonas sp002869685",
                "ani": 77.0138,
                "matched_fragments": 74,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Desulfuromonadaceae;g__Desulfuromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000167355.1",
                "gtdb_species": "s__Desulfuromonas acetoxidans",
                "ani": 76.803,
                "matched_fragments": 83,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Desulfuromonadaceae;g__Desulfuromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.313,
        "cell_length": 0.202,
        "doubling_h": 0.943,
        "growth_tmp": 29.222,
        "optimum_tmp": 27.813,
        "optimum_ph": 7.044,
        "genome_size": 3929744.378,
        "gc_content": 58.184,
        "coding_genes": 3362.515,
        "rRNA16S_genes": 2.727,
        "tRNA_genes": 51.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.777,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.904,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.047,
        "vibrio_cell_shape": 0.047,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfuromonadia",
        "o__Desulfuromonadales",
        "f__Desulfuromonadaceae",
        "g__Desulfuromonas",
        "s__Desulfuromonas sp001751155"
    ],
    "_genome_taxon": [
        "Desulfuromonadales",
        "bacterium",
        "C00003068",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfuromonadia",
        "o__Desulfuromonadales",
        "f__Desulfuromonadaceae",
        "g__Desulfuromonas",
        "s__Desulfuromonas sp001751155",
        "Bacteria",
        "Desulfobacterota",
        "Desulfuromonadia",
        "Desulfuromonadales",
        "Desulfuromonadaceae",
        "Desulfuromonas",
        "Desulfuromonas",
        "sp001751155"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}