{ "type": "genome", "identifier": "GCA_001751165.1", "organism": "Desulfobacterales bacterium PC51MH44", "title": "Desulfobacterales bacterium PC51MH44", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "California Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001751165.1", "bioproject": "PRJNA326769", "biosample": "SAMN05301633", "wgs_master": "MAVQ00000000.1", "refseq_category": "na", "taxid": "1869304", "species_taxid": "1869304", "organism_name": "Desulfobacterales bacterium PC51MH44", "infraspecific_name": "", "isolate": "PC51MH44", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/03", "asm_name": "ASM175116v1", "submitter": "California Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/751/165/GCA_001751165.1_ASM175116v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-03", "dateModified": "2016-10-03", "datePublished": "2016-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobacterales bacterium PC51MH44" ], "sample_taxid": [ "1869304" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Santa Monica Mounds" ], "sample_host_location_id": [], "data_size": "0.844 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.08, "contamination": 15.19, "strain_heterogeneity": 5.56, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2929617", "Number of Sequences": "568", "Longest Sequences (bp)": "67001", "N50 (bp)": "5371", "Gap Ratio (%)": "0.004574", "GCcontent (%)": "43.7", "Number of CDSs": "2242", "Average Protein Length": "299.8", "Coding Ratio (%)": "68.8", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 77.08, "contamination": 15.19, "strain_heterogeneity": 5.56 }, "gtdb_result": [ { "accession": "GCA_001751005.1", "gtdb_species": "s__S5133MH16 sp001751005", "ani": 79.1922, "matched_fragments": 156, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__S5133MH16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004193595.1", "gtdb_species": "s__S5133MH16 sp004193595", "ani": 78.6692, "matched_fragments": 194, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__S5133MH16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013203195.1", "gtdb_species": "s__Desulfatibia_A sp013203195", "ani": 76.8488, "matched_fragments": 67, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__Desulfatibia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012974475.1", "gtdb_species": "s__JAAXQD01 sp012974475", "ani": 76.7963, "matched_fragments": 128, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__JAAXQD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014381545.1", "gtdb_species": "s__Desulfaltia bathyphila", "ani": 76.705, "matched_fragments": 56, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__ETH-SRB1;g__Desulfaltia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014383215.1", "gtdb_species": "s__Desulfatibia_A vada", "ani": 76.7007, "matched_fragments": 93, "total_fragments": 732, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__Desulfatibia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.067, "cell_length": 0.331, "doubling_h": 1.346, "growth_tmp": 27.625, "optimum_tmp": 30.189, "optimum_ph": 7.333, "genome_size": 5179223.747, "gc_content": 51.027, "coding_genes": 4062.428, "rRNA16S_genes": 3.857, "tRNA_genes": 52.571, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.645, "range_salinity": 1.0, "facultative_respiration": 0.02, "anaerobic_respiration": 0.979, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.833, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.166, "bacillus_cell_shape": 0.702, "coccus_cell_shape": 0.027, "filament_cell_shape": 0.108, "coccobacillus_cell_shape": 0.081, "vibrio_cell_shape": 0.081, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__UBA11574", "g__", "s__" ], "_genome_taxon": [ "Desulfobacterales", "bacterium", "PC51MH44", "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__UBA11574", "g__", "s__", "Bacteria", "Desulfobacterota", "Desulfobacteria", "Desulfobacterales", "UBA11574", "g", "", "", "s", "", "" ], "_meo": [ { "id": "MEO_0001170", "label": "cold seep" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }