{ "type": "genome", "identifier": "GCA_001785175.1", "organism": "Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16", "title": "Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001785175.1", "bioproject": "PRJNA288027", "biosample": "SAMN04314790", "wgs_master": "MFSY00000000.1", "refseq_category": "na", "taxid": "1817764", "species_taxid": "1817764", "organism_name": "Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/19", "asm_name": "ASM178517v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/785/175/GCA_001785175.1_ASM178517v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-19", "dateModified": "2016-10-19", "datePublished": "2016-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_01_FULL_65_16" ], "sample_taxid": [ "1817764" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rifle, CO" ], "sample_host_location_id": [], "data_size": "0.472 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1705202", "Number of Sequences": "135", "Longest Sequences (bp)": "43088", "N50 (bp)": "15661", "Gap Ratio (%)": "0.485808", "GCcontent (%)": "65.4", "Number of CDSs": "1527", "Average Protein Length": "302.4", "Coding Ratio (%)": "81.2", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfuricaulis limicola", "strain": "strain=HA5", "accession": "GCA_002355735.1", "taxid": 1620215, "species_taxid": 1620215, "relation_to_type": "type", "validated": true, "ani": 79.6519, "matched_fragments": 284, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurifustis variabilis", "strain": "strain=skN76", "accession": "GCA_002355415.1", "taxid": 1675686, "species_taxid": 1675686, "relation_to_type": "type", "validated": true, "ani": 78.5183, "matched_fragments": 228, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 77.6323, "matched_fragments": 139, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 77.5762, "matched_fragments": 155, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 77.486, "matched_fragments": 128, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 77.2675, "matched_fragments": 125, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=ATCC 9043", "accession": "GCA_004327905.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 76.8926, "matched_fragments": 82, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.7432, "matched_fragments": 166, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.6774, "matched_fragments": 90, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 76.6411, "matched_fragments": 94, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.3105, "matched_fragments": 118, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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