{
    "type": "genome",
    "identifier": "GCA_001800375.1",
    "organism": "Elusimicrobia bacterium RIFOXYA2_FULL_53_38",
    "title": "Elusimicrobia bacterium RIFOXYA2_FULL_53_38",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Banfield Lab, University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001800375.1",
        "bioproject": "PRJNA288027",
        "biosample": "SAMN04314339",
        "wgs_master": "MGVG00000000.1",
        "refseq_category": "na",
        "taxid": "1797961",
        "species_taxid": "1797961",
        "organism_name": "Elusimicrobia bacterium RIFOXYA2_FULL_53_38",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/20",
        "asm_name": "ASM180037v1",
        "submitter": "Banfield Lab, University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/800/375/GCA_001800375.1_ASM180037v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-20",
    "dateModified": "2016-10-20",
    "datePublished": "2016-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Elusimicrobia bacterium RIFOXYA2_FULL_53_38"
        ],
        "sample_taxid": [
            "1797961"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rifle, CO"
        ],
        "sample_host_location_id": [],
        "data_size": "0.882 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3091750",
        "Number of Sequences": "55",
        "Longest Sequences (bp)": "236473",
        "N50 (bp)": "98848",
        "Gap Ratio (%)": "0.002976",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "2579",
        "Average Protein Length": "335.9",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__YA12-FULL-51-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__YA12-FULL-51-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
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                "gtdb_species": "s__UBA9634 sp001799565",
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                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9634",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903867985.1",
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                "matched_fragments": 246,
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__YA12-FULL-51-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018829985.1",
                "gtdb_species": "s__JAHJSU01 sp018829985",
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                "matched_fragments": 198,
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__JAHJSU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903879915.1",
                "gtdb_species": "s__UBA9959 sp903879915",
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCA_001799735.1",
                "gtdb_species": "s__UBA9959 sp001799735",
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903917735.1",
                "gtdb_species": "s__UBA9959 sp903917735",
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                "matched_fragments": 141,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016208085.1",
                "gtdb_species": "s__JAHJSU01 sp016208085",
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                "matched_fragments": 175,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__JAHJSU01",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003482905.1",
                "gtdb_species": "s__UBA9959 sp003482905",
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                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001871115.1",
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                "matched_fragments": 99,
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                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
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                "status": "-"
            },
            {
                "accession": "GCA_903889965.1",
                "gtdb_species": "s__UBA9959 sp903889965",
                "ani": 76.2422,
                "matched_fragments": 98,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001799795.1",
                "gtdb_species": "s__UBA9959 sp001799795",
                "ani": 76.1207,
                "matched_fragments": 81,
                "total_fragments": 1002,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Elusimicrobia;o__Elusimicrobiales;f__UBA9959;g__UBA9959",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Elusimicrobia",
        "o__Elusimicrobiales",
        "f__UBA9959",
        "g__YA12-FULL-51-18",
        "s__YA12-FULL-51-18 sp001800245"
    ],
    "_genome_taxon": [
        "Elusimicrobia",
        "bacterium",
        "RIFOXYA2_FULL_53_38",
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Elusimicrobia",
        "o__Elusimicrobiales",
        "f__UBA9959",
        "g__YA12-FULL-51-18",
        "s__YA12-FULL-51-18 sp001800245",
        "Bacteria",
        "Elusimicrobiota",
        "Elusimicrobia",
        "Elusimicrobiales",
        "UBA9959",
        "YA12-FULL-51-18",
        "YA12-FULL-51-18",
        "sp001800245"
    ],
    "_meo": [
        {
            "id": "MEO_0001480",
            "label": "subsurface"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}