{ "type": "genome", "identifier": "GCA_001830365.1", "organism": "Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210", "title": "Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001830365.1", "bioproject": "PRJNA288027", "biosample": "SAMN04316113", "wgs_master": "MHZM00000000.1", "refseq_category": "na", "taxid": "1802007", "species_taxid": "1802007", "organism_name": "Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "ASM183036v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/830/365/GCA_001830365.1_ASM183036v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210" ], "sample_taxid": [ "1802007" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rifle, CO" ], "sample_host_location_id": [], "data_size": "1.062 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.45, "contamination": 10.88, 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"validated": true, "ani": 88.7076, "matched_fragments": 214, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 85.6681, "matched_fragments": 215, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.5989, "matched_fragments": 174, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taeanensis", "strain": "strain=MS-3", "accession": "GCA_000498575.2", "taxid": 574962, "species_taxid": 574962, "relation_to_type": "type", "validated": true, "ani": 83.457, "matched_fragments": 193, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 2759166, "relation_to_type": "type", "validated": true, "ani": 82.1144, "matched_fragments": 128, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guryensis", "strain": "strain=SR9", "accession": "GCA_014164785.1", "taxid": 2759165, "species_taxid": 2759165, "relation_to_type": "type", "validated": true, "ani": 81.9538, "matched_fragments": 133, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cuatrocienegasensis", "strain": "strain=CIP 109853", "accession": "GCA_900110925.1", "taxid": 543360, "species_taxid": 543360, "relation_to_type": "type", "validated": true, "ani": 81.8358, "matched_fragments": 141, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 81.7192, "matched_fragments": 136, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 81.6398, "matched_fragments": 145, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 81.6121, "matched_fragments": 123, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 81.4786, "matched_fragments": 126, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernicola", "strain": "strain=K1S02-6", "accession": "GCA_003596405.1", "taxid": 2320866, "species_taxid": 2320866, "relation_to_type": "type", "validated": true, "ani": 81.0793, "matched_fragments": 144, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=LMG 22563", "accession": "GCA_900113905.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 80.9943, "matched_fragments": 128, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 80.9478, "matched_fragments": 128, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guineae", "strain": "strain=LMG 24016", "accession": "GCA_900113745.1", "taxid": 425504, "species_taxid": 425504, "relation_to_type": "type", "validated": true, "ani": 80.944, "matched_fragments": 119, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flavescens", "strain": "strain=NBRC 103044", "accession": "GCA_002091575.1", "taxid": 29435, "species_taxid": 29435, "relation_to_type": "type", "validated": true, "ani": 80.9297, "matched_fragments": 128, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 80.4107, "matched_fragments": 117, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=LMG 19695", "accession": "GCA_001870465.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 79.9106, "matched_fragments": 111, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 79.8766, "matched_fragments": 114, "total_fragments": 382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guariconensis", "strain": "strain=LMG 27394", "accession": "GCA_900102675.1", "taxid": 1288410, "species_taxid": 1288410, "relation_to_type": "suspected-type", 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