{ "type": "genome", "identifier": "GCA_001830745.1", "organism": "Sulfuricurvum sp. RIFOXYD2_FULL_44_160", "title": "Sulfuricurvum sp. RIFOXYD2_FULL_44_160", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001830745.1", "bioproject": "PRJNA288027", "biosample": "SAMN04314705", "wgs_master": "MIBV00000000.1", "refseq_category": "na", "taxid": "1802249", "species_taxid": "1802249", "organism_name": "Sulfuricurvum sp. RIFOXYD2_FULL_44_160", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "ASM183074v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/830/745/GCA_001830745.1_ASM183074v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfuricurvum sp. RIFOXYD2_FULL_44_160" ], "sample_taxid": [ "1802249" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rifle, CO" ], "sample_host_location_id": [], "data_size": "0.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2176059", "Number of Sequences": "419", "Longest Sequences (bp)": "30056", "N50 (bp)": "9017", "Gap Ratio (%)": "0.011718", "GCcontent (%)": "43.9", "Number of CDSs": "1905", "Average Protein Length": "289.0", "Coding Ratio (%)": "75.9", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfuricurvum kujiense", "strain": "strain=DSM 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"Campylobacterales", "Sulfurimonadaceae", "Sulfuricurvum", "Sulfuricurvum", "kujiense", "A" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }