{
    "type": "genome",
    "identifier": "GCA_001830985.1",
    "organism": "Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12",
    "title": "Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Banfield Lab, University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001830985.1",
        "bioproject": "PRJNA288027",
        "biosample": "SAMN04314068",
        "wgs_master": "MIDI00000000.1",
        "refseq_category": "na",
        "taxid": "1802373",
        "species_taxid": "1802373",
        "organism_name": "Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "ASM183098v1",
        "submitter": "Banfield Lab, University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/830/985/GCA_001830985.1_ASM183098v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12"
        ],
        "sample_taxid": [
            "1802373"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rifle, CO"
        ],
        "sample_host_location_id": [],
        "data_size": "0.887 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.98,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3144221",
        "Number of Sequences": "260",
        "Longest Sequences (bp)": "71316",
        "N50 (bp)": "14679",
        "Gap Ratio (%)": "2.136332",
        "GCcontent (%)": "41.6",
        "Number of CDSs": "2735",
        "Average Protein Length": "286.2",
        "Coding Ratio (%)": "74.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 93.98,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002780895.1",
                "gtdb_species": "s__0-14-3-00-41-53 sp002780895",
                "ani": 81.4136,
                "matched_fragments": 324,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__0-14-3-00-41-53",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_001805125.1",
                "gtdb_species": "s__RBG-13-39-12 sp001805125",
                "ani": 78.0583,
                "matched_fragments": 248,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__RBG-13-39-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016212245.1",
                "gtdb_species": "s__JACRGU01 sp016212245",
                "ani": 78.0043,
                "matched_fragments": 150,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__JACRGU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016873595.1",
                "gtdb_species": "s__VGWZ01 sp016873595",
                "ani": 77.4914,
                "matched_fragments": 144,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__VGWZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016873575.1",
                "gtdb_species": "s__VGWY01 sp016873575",
                "ani": 77.215,
                "matched_fragments": 134,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__VGWY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002328665.1",
                "gtdb_species": "s__UBA2194 sp002328665",
                "ani": 75.9263,
                "matched_fragments": 97,
                "total_fragments": 908,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__UBA2194",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.389,
        "doubling_h": 1.306,
        "growth_tmp": 61.04,
        "optimum_tmp": 60.0,
        "optimum_ph": 7.0,
        "genome_size": 2004483.38,
        "gc_content": 34.295,
        "coding_genes": 2028.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.333,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.333,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Thermodesulfovibrionia",
        "o__Thermodesulfovibrionales",
        "f__SM23-35",
        "g__",
        "s__"
    ],
    "_genome_taxon": [
        "Thermodesulfovibrio",
        "sp.",
        "RBG_19FT_COMBO_42_12",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Thermodesulfovibrionia",
        "o__Thermodesulfovibrionales",
        "f__SM23-35",
        "g__",
        "s__",
        "Bacteria",
        "Nitrospirota",
        "Thermodesulfovibrionia",
        "Thermodesulfovibrionales",
        "SM23-35",
        "g",
        "",
        "",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0001480",
            "label": "subsurface"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}