{ "type": "genome", "identifier": "GCA_001831025.1", "organism": "Treponema sp. GWB1_62_6", "title": "Treponema sp. GWB1_62_6", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001831025.1", "bioproject": "PRJNA288027", "biosample": "SAMN04314120", "wgs_master": "MIDL00000000.1", "refseq_category": "na", "taxid": "1802379", "species_taxid": "1802379", "organism_name": "Treponema sp. GWB1_62_6", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "ASM183102v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/831/025/GCA_001831025.1_ASM183102v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema sp. GWB1_62_6" ], "sample_taxid": [ "1802379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rifle, CO" ], "sample_host_location_id": [], "data_size": "1.264 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4532566", "Number of Sequences": "278", "Longest Sequences (bp)": "95772", "N50 (bp)": "19873", "Gap Ratio (%)": "1.306501", "GCcontent (%)": "61.5", "Number of CDSs": "3824", "Average Protein Length": "327.3", "Coding Ratio (%)": "82.8", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 91.67, "contamination": 0.0, 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"gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Spiro-10", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.59, "cell_length": 0.834, "doubling_h": 0.49, "growth_tmp": 35.047, "optimum_tmp": 33.75, "optimum_ph": 7.183, "genome_size": 2974429.677, "gc_content": 43.752, "coding_genes": 2837.944, "rRNA16S_genes": 2.285, "tRNA_genes": 45.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.055, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.055, "spiral_cell_shape": 0.888 }, "_gtdb_taxon": [ "d__Bacteria", "p__Spirochaetota", "c__Spirochaetia", "o__Treponematales", "f__Breznakiellaceae", "g__UBA12037", "s__UBA12037 sp003527485" ], "_genome_taxon": [ "Treponema", "sp.", "GWB1_62_6", "d__Bacteria", "p__Spirochaetota", "c__Spirochaetia", "o__Treponematales", "f__Breznakiellaceae", "g__UBA12037", "s__UBA12037 sp003527485", "Bacteria", "Spirochaetota", "Spirochaetia", "Treponematales", "Breznakiellaceae", "UBA12037", "UBA12037", "sp003527485" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }