{ "type": "genome", "identifier": "GCA_001870995.2", "organism": "Chitinophaga sp. CB10", "title": "Chitinophaga sp. CB10", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Univ Estadual Paulista UNESP/FCAV", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001870995.2", "bioproject": "PRJNA335650", "biosample": "SAMN05582878", "wgs_master": "MLAV00000000.2", "refseq_category": "na", "taxid": "1891659", "species_taxid": "1891659", "organism_name": "Chitinophaga sp. CB10", "infraspecific_name": "", "isolate": "CB10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM187099v2", "submitter": "Univ Estadual Paulista UNESP/FCAV", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/870/995/GCA_001870995.2_ASM187099v2", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga sp. CB10" ], "sample_taxid": [ "1891659" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "1.779 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6271929", "Number of Sequences": "33", "Longest Sequences (bp)": "826508", "N50 (bp)": "307488", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "4995", "Average Protein Length": "372.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga jiangningensis", "strain": "strain=DSM 27406", "accession": "GCA_900142605.1", "taxid": 1419482, "species_taxid": 1419482, "relation_to_type": "type", "validated": true, "ani": 85.0807, "matched_fragments": 1686, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga dinghuensis", "strain": "strain=DSM 29821", "accession": "GCA_003259435.1", "taxid": 1539050, "species_taxid": 1539050, "relation_to_type": "type", "validated": true, "ani": 80.4973, "matched_fragments": 916, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 79.6742, "matched_fragments": 736, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryzae", "strain": "strain=1303", "accession": "GCA_012516375.2", "taxid": 2725414, "species_taxid": 2725414, "relation_to_type": "type", "validated": true, "ani": 79.226, "matched_fragments": 695, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": "strain=O9", "accession": "GCA_009928525.1", "taxid": 1233460, "species_taxid": 1233460, "relation_to_type": "type", "validated": true, "ani": 79.223, "matched_fragments": 650, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga eiseniae", "strain": "strain=DSM 22224", "accession": "GCA_900167135.1", "taxid": 634771, "species_taxid": 634771, "relation_to_type": "type", "validated": true, "ani": 79.1878, "matched_fragments": 670, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga qingshengii", "strain": "strain=JCM 30026", "accession": "GCA_014529935.1", "taxid": 1569794, "species_taxid": 1569794, "relation_to_type": "type", "validated": true, "ani": 79.1682, "matched_fragments": 651, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga varians", "strain": "strain=KACC 19415", "accession": "GCA_014529945.1", "taxid": 2202339, "species_taxid": 2202339, "relation_to_type": "type", "validated": true, "ani": 79.0998, "matched_fragments": 634, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga flava", "strain": "strain=GDMCC 1.1325", "accession": "GCA_003308995.1", "taxid": 2259036, "species_taxid": 2259036, "relation_to_type": "type", "validated": true, "ani": 79.0316, "matched_fragments": 591, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisegetis", "strain": "strain=DSM 18108", "accession": "GCA_900168065.1", "taxid": 393003, "species_taxid": 393003, "relation_to_type": "type", "validated": true, "ani": 79.0052, "matched_fragments": 629, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga fulva", "strain": "strain=G-6-1-13", "accession": "GCA_012927205.1", "taxid": 2728842, "species_taxid": 2728842, "relation_to_type": "type", "validated": true, "ani": 78.9963, "matched_fragments": 646, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 78.8292, "matched_fragments": 614, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga niastensis", "strain": "strain=DSM 24859", "accession": "GCA_003014755.1", "taxid": 536980, "species_taxid": 536980, "relation_to_type": "type", "validated": true, "ani": 78.8198, "matched_fragments": 500, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 78.7231, "matched_fragments": 589, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga terrae (ex Kim and Jung 2007)", "strain": "strain=DSM 23920", "accession": "GCA_900107795.1", "taxid": 408074, "species_taxid": 408074, "relation_to_type": "type", "validated": true, "ani": 78.709, "matched_fragments": 505, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga rupis", "strain": "strain=DSM 21039", "accession": "GCA_900109685.1", "taxid": 573321, "species_taxid": 573321, "relation_to_type": "type", "validated": true, "ani": 77.068, "matched_fragments": 367, "total_fragments": 2075, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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