{ "type": "genome", "identifier": "GCA_001873065.1", "organism": "Flavobacteriaceae bacterium CG2_30_31_66", "title": "Flavobacteriaceae bacterium CG2_30_31_66", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001873065.1", "bioproject": "PRJNA297582", "biosample": "SAMN04328302", "wgs_master": "MNYM00000000.1", "refseq_category": "na", "taxid": "1805159", "species_taxid": "1805159", "organism_name": "Flavobacteriaceae bacterium CG2_30_31_66", "infraspecific_name": "", "isolate": "CG2_30_31_66", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/09", "asm_name": "ASM187306v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/873/065/GCA_001873065.1_ASM187306v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-09", "dateModified": "2016-11-09", "datePublished": "2016-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium CG2_30_31_66" ], "sample_taxid": [ "1805159" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Crystal Geyser near Green River, Utah" ], "sample_host_location_id": [], "data_size": "0.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2988978", "Number of Sequences": "50", "Longest Sequences (bp)": "261154", "N50 (bp)": "91988", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.4", "Number of CDSs": "2645", "Average Protein Length": "332.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter gangjinensis", "strain": "strain=KCTC 22729", "accession": "GCA_002954645.1", "taxid": 574710, "species_taxid": 574710, "relation_to_type": "type", "validated": true, "ani": 82.9646, "matched_fragments": 653, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter gangjinensis", "strain": "strain=JCM 16152", "accession": "GCA_020532765.1", "taxid": 574710, "species_taxid": 574710, "relation_to_type": "type", "validated": true, "ani": 82.9343, "matched_fragments": 662, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 78.2303, "matched_fragments": 432, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 78.1667, "matched_fragments": 438, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 78.1626, "matched_fragments": 387, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 78.0968, "matched_fragments": 385, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 78.0372, "matched_fragments": 352, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 78.0225, "matched_fragments": 381, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 77.9973, "matched_fragments": 372, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 77.9848, "matched_fragments": 379, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 77.9651, "matched_fragments": 387, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 77.9351, "matched_fragments": 378, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 77.9338, "matched_fragments": 385, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 77.8809, "matched_fragments": 379, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.7629, "matched_fragments": 353, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 77.7582, "matched_fragments": 378, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 77.6754, "matched_fragments": 362, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": 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