{ "type": "genome", "identifier": "GCA_001873705.1", "organism": "Syntrophobacteraceae bacterium CG2_30_61_12", "title": "Syntrophobacteraceae bacterium CG2_30_61_12", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001873705.1", "bioproject": "PRJNA297582", "biosample": "SAMN04328311", "wgs_master": "MNZR00000000.1", "refseq_category": "na", "taxid": "1805379", "species_taxid": "1805379", "organism_name": "Syntrophobacteraceae bacterium CG2_30_61_12", "infraspecific_name": "", "isolate": "CG2_30_61_12", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/09", "asm_name": "ASM187370v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/873/705/GCA_001873705.1_ASM187370v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-09", "dateModified": "2016-11-09", "datePublished": "2016-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Syntrophobacteraceae bacterium CG2_30_61_12" ], "sample_taxid": [ "1805379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Crystal Geyser near Green River, Utah" ], "sample_host_location_id": [], "data_size": "1.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3671253", "Number of Sequences": "378", "Longest Sequences (bp)": "51071", "N50 (bp)": "12407", "Gap Ratio (%)": "0.108682", "GCcontent (%)": "60.8", "Number of CDSs": "3001", "Average Protein Length": "306.2", "Coding Ratio (%)": "75.1", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfacinum infernum", "strain": "strain=DSM 9756", "accession": "GCA_900129305.1", "taxid": 35837, "species_taxid": 35837, "relation_to_type": "type", "validated": true, "ani": 76.507, "matched_fragments": 172, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfacinum hydrothermale", "strain": "strain=DSM 13146", "accession": "GCA_900176285.1", "taxid": 109258, "species_taxid": 109258, "relation_to_type": "type", "validated": true, "ani": 76.4967, "matched_fragments": 141, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoglaeba alkanexedens", "strain": "strain=ALDC", "accession": "GCA_005377625.1", "taxid": 361111, "species_taxid": 361111, "relation_to_type": "type", "validated": true, "ani": 76.3563, "matched_fragments": 115, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophobacter fumaroxidans", "strain": "strain=MPOB", "accession": "GCA_000014965.1", "taxid": 119484, "species_taxid": 119484, "relation_to_type": "type", "validated": true, "ani": 76.0928, "matched_fragments": 76, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoferrobacter suflitae", "strain": "strain=DRH4", "accession": "GCA_022603395.1", "taxid": 2865782, "species_taxid": 2865782, "relation_to_type": "type", "validated": true, "ani": 75.8945, "matched_fragments": 88, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosoma caldarium", "strain": "strain=DSM 22027", "accession": "GCA_003751385.1", "taxid": 610254, "species_taxid": 610254, "relation_to_type": "type", "validated": true, "ani": 75.8812, "matched_fragments": 83, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 75.1761, "matched_fragments": 51, "total_fragments": 1052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001873705.1", "gtdb_species": "s__CG2-30-61-12 sp001873705", "ani": 100.0, "matched_fragments": 1042, "total_fragments": 1052, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__CG2-30-61-12", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_014359885.1", "gtdb_species": "s__Desulfacinum sp014359885", "ani": 76.7509, "matched_fragments": 175, "total_fragments": 1052, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__Desulfacinum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129305.1", "gtdb_species": "s__Desulfacinum infernum", "ani": 76.507, "matched_fragments": 172, "total_fragments": 1052, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__Desulfacinum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900176285.1", "gtdb_species": "s__Desulfacinum hydrothermale", "ani": 76.4967, "matched_fragments": 141, "total_fragments": 1052, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__DSM-9756;g__Desulfacinum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005377625.1", "gtdb_species": "s__Desulfoglaeba alkanexedens", "ani": 76.3563, "matched_fragments": 115, "total_fragments": 1052, "gtdb_taxonomy": 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"DSM-9756", "CG2-30-61-12", "CG2-30-61-12", "sp001873705" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }