{ "type": "genome", "identifier": "GCA_001898145.1", "organism": "Dyadobacter sp. 50-39", "title": "Dyadobacter sp. 50-39", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001898145.1", "bioproject": "PRJNA279279", "biosample": "SAMN05660534", "wgs_master": "MKSR00000000.1", "refseq_category": "na", "taxid": "1895756", "species_taxid": "1895756", "organism_name": "Dyadobacter sp. 50-39", "infraspecific_name": "", "isolate": "50-39", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189814v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/898/145/GCA_001898145.1_ASM189814v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter sp. 50-39" ], "sample_taxid": [ "1895756" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: University of Cape Town" ], "sample_host_location_id": [], "data_size": "2.200 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7719061", "Number of Sequences": "48", "Longest Sequences 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"GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 82.8722, "matched_fragments": 1542, "total_fragments": 2551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sandarakinus", "strain": "strain=Q3-56", "accession": "GCA_016894445.1", "taxid": 2747268, "species_taxid": 2747268, "relation_to_type": "type", "validated": true, "ani": 77.522, "matched_fragments": 499, "total_fragments": 2551, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001898145.1", "gtdb_species": "s__Dyadobacter sp001898145", "ani": 100.0, "matched_fragments": 2547, "total_fragments": 2551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", 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1, "status": "-" }, { "accession": "GCF_014641595.1", "gtdb_species": "s__Dyadobacter endophyticus", "ani": 83.417, "matched_fragments": 1654, "total_fragments": 2551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000023125.1", "gtdb_species": "s__Dyadobacter fermentans", "ani": 82.9523, "matched_fragments": 1481, "total_fragments": 2551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000382205.1", "gtdb_species": "s__Dyadobacter beijingensis", "ani": 82.8804, "matched_fragments": 1540, "total_fragments": 2551, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.146, "cell_length": 0.32, "doubling_h": null, "growth_tmp": 26.833, "optimum_tmp": 25.0, "optimum_ph": 6.968, "genome_size": 7126230.0, "gc_content": 49.766, "coding_genes": 5709.667, "rRNA16S_genes": 4.0, "tRNA_genes": 38.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, 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