{ "type": "genome", "identifier": "GCA_001898505.1", "organism": "Sphingobacteriales bacterium 50-39", "title": "Sphingobacteriales bacterium 50-39", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001898505.1", "bioproject": "PRJNA279279", "biosample": "SAMN05660568", "wgs_master": "MKTZ00000000.1", "refseq_category": "na", "taxid": "1895841", "species_taxid": "1895841", "organism_name": "Sphingobacteriales bacterium 50-39", "infraspecific_name": "", "isolate": "50-39", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189850v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/898/505/GCA_001898505.1_ASM189850v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacteriales bacterium 50-39" ], "sample_taxid": [ "1895841" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: University of Cape Town" ], "sample_host_location_id": [], "data_size": "2.250 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7898456", "Number of Sequences": "27", "Longest Sequences (bp)": "1138547", "N50 (bp)": "498715", "Gap Ratio (%)": "0.000304", "GCcontent (%)": "50.3", "Number of CDSs": "6421", "Average Protein Length": "370.8", "Coding Ratio (%)": "90.4", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Puia dinghuensis", "strain": "strain=CGMCC 1.15448", "accession": "GCA_014642875.1", "taxid": 1792502, "species_taxid": 1792502, "relation_to_type": "type", "validated": true, "ani": 77.3938, "matched_fragments": 408, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=DSM 18116", "accession": "GCA_004291315.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 76.2839, "matched_fragments": 119, 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95, "status": "below_threshold" }, { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, "relation_to_type": "type", "validated": true, "ani": 76.0604, "matched_fragments": 133, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraflavitalea soli", "strain": "strain=5GH32-13", "accession": "GCA_003555545.1", "taxid": 2315862, "species_taxid": 2315862, "relation_to_type": "type", "validated": true, "ani": 75.9791, "matched_fragments": 152, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga parva", "strain": "strain=LY-1", "accession": "GCA_003071345.1", "taxid": 2169414, "species_taxid": 2169414, "relation_to_type": "type", "validated": true, "ani": 75.9332, "matched_fragments": 69, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium 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"GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 75.8604, "matched_fragments": 85, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella beijingensis", "strain": "strain=3A5MI-3", "accession": "GCA_020034665.1", "taxid": 2872700, "species_taxid": 2872700, "relation_to_type": "type", "validated": true, "ani": 75.6972, "matched_fragments": 60, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 75.6954, "matched_fragments": 91, "total_fragments": 2619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga sedimenti", "strain": "strain=KCTC 52590", "accession": "GCA_023156195.1", "taxid": 2033606, "species_taxid": 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