{
    "type": "genome",
    "identifier": "GCA_001898665.1",
    "organism": "Burkholderiales bacterium 68-20",
    "title": "Burkholderiales bacterium 68-20",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Banfield Lab, University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001898665.1",
        "bioproject": "PRJNA279279",
        "biosample": "SAMN05660588",
        "wgs_master": "MKUT00000000.1",
        "refseq_category": "na",
        "taxid": "1895732",
        "species_taxid": "1895732",
        "organism_name": "Burkholderiales bacterium 68-20",
        "infraspecific_name": "",
        "isolate": "68-20",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/09",
        "asm_name": "ASM189866v1",
        "submitter": "Banfield Lab, University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/898/665/GCA_001898665.1_ASM189866v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-09",
    "dateModified": "2016-12-09",
    "datePublished": "2016-12-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Burkholderiales bacterium 68-20"
        ],
        "sample_taxid": [
            "1895732"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: University of Cape Town"
        ],
        "sample_host_location_id": [],
        "data_size": "1.230 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 88.6,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4505236",
        "Number of Sequences": "305",
        "Longest Sequences (bp)": "74599",
        "N50 (bp)": "22291",
        "Gap Ratio (%)": "0.008301",
        "GCcontent (%)": "68.1",
        "Number of CDSs": "3818",
        "Average Protein Length": "322.7",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_001298675.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3349,
                "matched_fragments": 876,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.31,
                "matched_fragments": 884,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=CY1",
                "accession": "GCA_000282995.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8588,
                "matched_fragments": 429,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=DSM 26006",
                "accession": "GCA_003182375.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4287,
                "matched_fragments": 619,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3717,
                "matched_fragments": 705,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora jejuensis",
                "strain": "strain=KCTC 32230",
                "accession": "GCA_017811175.1",
                "taxid": 1267217,
                "species_taxid": 1267217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2814,
                "matched_fragments": 700,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9865,
                "matched_fragments": 700,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9144,
                "matched_fragments": 675,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8849,
                "matched_fragments": 689,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrae",
                "strain": "strain=NBRC 106524",
                "accession": "GCA_001544075.1",
                "taxid": 673548,
                "species_taxid": 673548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7739,
                "matched_fragments": 644,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax konjaci",
                "strain": "strain=DSM 7481",
                "accession": "GCA_900112675.1",
                "taxid": 32040,
                "species_taxid": 32040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.632,
                "matched_fragments": 670,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=FDAARGOS_997",
                "accession": "GCA_016127415.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5697,
                "matched_fragments": 746,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax valerianellae",
                "strain": "strain=DSM 16619",
                "accession": "GCA_900102625.1",
                "taxid": 187868,
                "species_taxid": 187868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4989,
                "matched_fragments": 648,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=NBRC 14950",
                "accession": "GCA_001598795.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4938,
                "matched_fragments": 740,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3014,
                "matched_fragments": 669,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
                "strain": "strain=NBRC 13960",
                "accession": "GCA_003568725.1",
                "taxid": 80881,
                "species_taxid": 80881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8887,
                "matched_fragments": 565,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
                "strain": "strain=DSM 1837",
                "accession": "GCA_004341365.1",
                "taxid": 80881,
                "species_taxid": 80881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7761,
                "matched_fragments": 588,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7325,
                "matched_fragments": 574,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5744,
                "matched_fragments": 538,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax aquiterrae",
                "strain": "strain=KCTC 23314",
                "accession": "GCA_014652235.1",
                "taxid": 747304,
                "species_taxid": 747304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4755,
                "matched_fragments": 697,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0946,
                "matched_fragments": 569,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia testudinis",
                "strain": "strain=27C",
                "accession": "GCA_017498525.1",
                "taxid": 2816950,
                "species_taxid": 2816950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0669,
                "matched_fragments": 558,
                "total_fragments": 1337,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 88.6,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001725235.1",
                "gtdb_species": "s__Acidovorax_C sp001725235",
                "ani": 99.819,
                "matched_fragments": 1220,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001298675.1",
                "gtdb_species": "s__Acidovorax_C caeni",
                "ani": 91.3158,
                "matched_fragments": 877,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000400995.2",
                "gtdb_species": "s__MR-S7 sp000400995",
                "ani": 84.7697,
                "matched_fragments": 791,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__MR-S7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000204645.1",
                "gtdb_species": "s__Alicycliphilus denitrificans",
                "ani": 84.6872,
                "matched_fragments": 736,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_014489595.1",
                "gtdb_species": "s__Acidovorax_F monticola",
                "ani": 84.3791,
                "matched_fragments": 776,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000739995.1",
                "gtdb_species": "s__Giesbergeria granuli",
                "ani": 83.9687,
                "matched_fragments": 661,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.66",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003755025.1",
                "gtdb_species": "s__Diaphorobacter nitroreducens",
                "ani": 83.3327,
                "matched_fragments": 691,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_018240985.1",
                "gtdb_species": "s__Alicycliphilus sp018240985",
                "ani": 82.9695,
                "matched_fragments": 609,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003269065.1",
                "gtdb_species": "s__Acidovorax_A anthurii",
                "ani": 82.3288,
                "matched_fragments": 709,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018240995.1",
                "gtdb_species": "s__Alicycliphilus sp018240995",
                "ani": 82.3159,
                "matched_fragments": 538,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003852545.1",
                "gtdb_species": "s__Acidovorax sp003852545",
                "ani": 82.3085,
                "matched_fragments": 721,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014207955.1",
                "gtdb_species": "s__Acidovorax soli_A",
                "ani": 82.2137,
                "matched_fragments": 776,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000484635.1",
                "gtdb_species": "s__Comamonas_C badia",
                "ani": 80.689,
                "matched_fragments": 578,
                "total_fragments": 1337,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.156,
        "doubling_h": 0.378,
        "growth_tmp": 29.607,
        "optimum_tmp": 29.969,
        "optimum_ph": 6.903,
        "genome_size": 5778279.099,
        "gc_content": 62.976,
        "coding_genes": 5025.666,
        "rRNA16S_genes": 3.776,
        "tRNA_genes": 58.305,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.751,
        "range_salinity": 0.26,
        "facultative_respiration": 0.09,
        "anaerobic_respiration": 0.028,
        "aerobic_respiration": 0.88,
        "mesophilic_range_tmp": 0.982,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 0.893,
        "coccus_cell_shape": 0.035,
        "filament_cell_shape": 0.003,
        "coccobacillus_cell_shape": 0.031,
        "vibrio_cell_shape": 0.021,
        "spiral_cell_shape": 0.014
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paenacidovorax",
        "s__Paenacidovorax sp001725235"
    ],
    "_genome_taxon": [
        "Burkholderiales",
        "bacterium",
        "68-20",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paenacidovorax",
        "s__Paenacidovorax sp001725235",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Paenacidovorax",
        "Paenacidovorax",
        "sp001725235"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}