{ "type": "genome", "identifier": "GCA_001899155.1", "organism": "Flavobacterium sp. 38-13", "title": "Flavobacterium sp. 38-13", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001899155.1", "bioproject": "PRJNA279279", "biosample": "SAMN05660601", "wgs_master": "MKVG00000000.1", "refseq_category": "na", "taxid": "1896168", "species_taxid": "1896168", "organism_name": "Flavobacterium sp. 38-13", "infraspecific_name": "", "isolate": "38-13", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189915v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/899/155/GCA_001899155.1_ASM189915v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp. 38-13" ], "sample_taxid": [ "1896168" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: University of Cape Town" ], "sample_host_location_id": [], "data_size": "1.070 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3801142", "Number of Sequences": "23", "Longest Sequences (bp)": "608108", "N50 (bp)": "293194", "Gap Ratio (%)": "0.035831", "GCcontent (%)": "37.9", "Number of CDSs": "3371", "Average Protein Length": "329.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 97.4183, "matched_fragments": 1124, "total_fragments": 1256, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=DSM 21886", "accession": "GCA_003663835.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 97.3367, "matched_fragments": 1131, "total_fragments": 1256, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 87.0816, "matched_fragments": 1036, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gossypii", "strain": "strain=DSM 100397", "accession": "GCA_014138495.1", "taxid": 1646119, "species_taxid": 1646119, "relation_to_type": "type", "validated": true, "ani": 81.5507, "matched_fragments": 797, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 81.386, "matched_fragments": 799, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 78.0417, "matched_fragments": 270, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 77.6484, "matched_fragments": 181, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 77.4428, "matched_fragments": 159, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 77.0835, "matched_fragments": 99, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002846575.1", "gtdb_species": "s__Flavobacterium lindanitolerans", "ani": 97.4183, "matched_fragments": 1124, "total_fragments": 1256, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_006385255.1", "gtdb_species": "s__Flavobacterium microcysteis", "ani": 87.0816, "matched_fragments": 1036, "total_fragments": 1256, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634455.1", "gtdb_species": "s__Flavobacterium endophyticum", "ani": 81.3953, "matched_fragments": 798, "total_fragments": 1256, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003865365.1", "gtdb_species": "s__Flavobacterium macacae", "ani": 78.9872, "matched_fragments": 422, "total_fragments": 1256, "gtdb_taxonomy": 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