{ "type": "genome", "identifier": "GCA_001899445.1", "organism": "Candidatus Desulfopertinax cowenii", "title": "Candidatus Desulfopertinax cowenii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Hawaii", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001899445.1", "bioproject": "PRJNA269163", "biosample": "SAMN06016028", "wgs_master": "MPOA00000000.1", "refseq_category": "na", "taxid": "1919273", "species_taxid": "1919273", "organism_name": "Candidatus Desulfopertinax cowenii", "infraspecific_name": "", "isolate": "modA32", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189944v1", "submitter": "University of Hawaii", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/899/445/GCA_001899445.1_ASM189944v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Desulfopertinax cowenii" ], "sample_taxid": [ "1919273" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "0.501 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1778734", "Number of Sequences": "6", "Longest Sequences (bp)": "825559", "N50 (bp)": "332249", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "1770", "Average Protein Length": "297.9", "Coding Ratio (%)": "88.9", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovirgula thermocuniculi", "strain": "strain=DSM 16036", "accession": "GCA_000429345.1", "taxid": 348842, "species_taxid": 348842, "relation_to_type": "type", "validated": true, "ani": 75.6248, "matched_fragments": 52, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001899445.1", "gtdb_species": "s__Desulfopertinax cowenii", "ani": 100.0, "matched_fragments": 589, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Ammonifexales;f__Desulforudaceae;g__Desulfopertinax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002375985.1", "gtdb_species": "s__Desulfopertinax sp002375985", "ani": 80.2606, "matched_fragments": 324, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Ammonifexales;f__Desulforudaceae;g__Desulfopertinax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014859075.1", "gtdb_species": "s__Desulfopertinax sp014859075", "ani": 79.084, "matched_fragments": 267, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Ammonifexales;f__Desulforudaceae;g__Desulfopertinax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000018425.1", "gtdb_species": "s__Desulforudis audaxviator", "ani": 78.349, "matched_fragments": 264, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Ammonifexales;f__Desulforudaceae;g__Desulforudis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002294005.1", "gtdb_species": "s__Desulforudis sp002294005", "ani": 78.2054, "matched_fragments": 182, "total_fragments": 589, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Ammonifexales;f__Desulforudaceae;g__Desulforudis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_B", "c__Desulfotomaculia", "o__Ammonifexales", "f__Desulforudaceae", "g__Desulfopertinax", "s__Desulfopertinax cowenii" ], "_genome_taxon": [ "Candidatus", "Desulfopertinax", "cowenii", "d__Bacteria", "p__Bacillota_B", "c__Desulfotomaculia", "o__Ammonifexales", "f__Desulforudaceae", "g__Desulfopertinax", "s__Desulfopertinax cowenii", "Bacteria", "Bacillota", "B", "Desulfotomaculia", "Ammonifexales", "Desulforudaceae", "Desulfopertinax", "Desulfopertinax", "cowenii" ], "_meo": [ { "id": "MEO_0001480", "label": "subsurface" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }