{ "type": "genome", "identifier": "GCA_001899705.1", "organism": "Sphingobacterium sp. 40-24", "title": "Sphingobacterium sp. 40-24", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Banfield Lab, University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001899705.1", "bioproject": "PRJNA279279", "biosample": "SAMN05660628", "wgs_master": "MKWH00000000.1", "refseq_category": "na", "taxid": "1895843", "species_taxid": "1895843", "organism_name": "Sphingobacterium sp. 40-24", "infraspecific_name": "", "isolate": "40-24", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189970v1", "submitter": "Banfield Lab, University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/899/705/GCA_001899705.1_ASM189970v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium sp. 40-24" ], "sample_taxid": [ "1895843" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: University of Cape Town" ], "sample_host_location_id": [], "data_size": "1.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobacterium siyangense", "strain": "strain=CGMCC 1.6855", "accession": "GCA_007830445.1", "taxid": 459529, "species_taxid": 459529, "relation_to_type": "type", "validated": true, "ani": 91.6881, "matched_fragments": 1582, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium paramultivorum", "strain": "strain=w15", "accession": "GCA_009660355.1", "taxid": 2886510, "species_taxid": 2886510, "relation_to_type": "type", "validated": true, "ani": 91.599, "matched_fragments": 1659, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium puteale", "strain": "strain=M05W1-28", "accession": "GCA_003627955.1", "taxid": 2420510, "species_taxid": 2420510, "relation_to_type": "type", "validated": true, "ani": 81.3855, "matched_fragments": 928, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium prati", "strain": "strain=arapr2", "accession": "GCA_013167215.1", "taxid": 2737006, "species_taxid": 2737006, "relation_to_type": "type", "validated": true, "ani": 81.1656, "matched_fragments": 856, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium athyrii", "strain": "strain=M46", "accession": "GCA_003071065.1", "taxid": 2152717, "species_taxid": 2152717, "relation_to_type": "type", "validated": true, "ani": 81.1029, "matched_fragments": 943, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium detergens", "strain": "strain=CECT 7938", "accession": "GCA_003610355.1", "taxid": 1145106, "species_taxid": 1145106, "relation_to_type": "type", "validated": true, "ani": 80.9556, "matched_fragments": 891, "total_fragments": 2070, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003071065.1", "gtdb_species": "s__Sphingobacterium athyrii", "ani": 81.1032, "matched_fragments": 943, "total_fragments": 2070, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.219, "cell_length": 0.103, "doubling_h": null, "growth_tmp": 28.833, "optimum_tmp": 31.687, "optimum_ph": 7.192, "genome_size": 5015607.692, "gc_content": 38.627, "coding_genes": 3922.0, "rRNA16S_genes": 4.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.045, "range_salinity": null, "facultative_respiration": 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