{ "type": "genome", "identifier": "GCA_001913905.1", "organism": "Clostridium perfringens", "title": "Clostridium perfringens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001913905.1", "bioproject": "PRJNA327106", "biosample": "SAMN05509317", "wgs_master": "MKXR00000000.1", "refseq_category": "na", "taxid": "1502", "species_taxid": "1502", "organism_name": "Clostridium perfringens", "infraspecific_name": "", "isolate": "0522A_28_397", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/22", "asm_name": "ASM191390v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/913/905/GCA_001913905.1_ASM191390v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-22", "dateModified": "2016-12-22", "datePublished": "2016-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium perfringens" ], "sample_taxid": [ "1502" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.923 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3417203", "Number of Sequences": "31", "Longest Sequences (bp)": "799085", "N50 (bp)": "250061", "Gap Ratio (%)": "0.000029", "GCcontent (%)": "28.3", "Number of CDSs": "3128", "Average Protein Length": "307.4", "Coding Ratio (%)": "84.4", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium perfringens", "strain": "strain=ATCC 13124", "accession": "GCA_000013285.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 98.1646, "matched_fragments": 992, "total_fragments": 1123, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium perfringens", "strain": "strain=FDAARGOS_903", "accession": "GCA_016027375.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 98.1263, "matched_fragments": 985, "total_fragments": 1123, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium tarantellae", "strain": "strain=DSM 3997", "accession": "GCA_009295725.1", "taxid": 39493, "species_taxid": 39493, "relation_to_type": "type", "validated": true, "ani": 78.3241, "matched_fragments": 360, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sarcina ventriculi", "strain": "strain=NCTC12966", "accession": "GCA_900456775.1", "taxid": 1267, "species_taxid": 1267, "relation_to_type": "type", "validated": true, "ani": 77.9399, "matched_fragments": 227, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium massiliamazoniense", "strain": "strain=ND2", "accession": "GCA_001403635.1", "taxid": 1347366, "species_taxid": 1347366, "relation_to_type": "type", "validated": true, "ani": 77.8026, "matched_fragments": 310, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 77.782, "matched_fragments": 265, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium mediterraneense", "strain": "strain=Marseille-P2434", "accession": "GCA_900091705.1", "taxid": 1805472, "species_taxid": 1805472, "relation_to_type": "type", "validated": true, "ani": 77.7474, "matched_fragments": 276, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 77.6988, "matched_fragments": 269, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chauvoei", "strain": "strain=DSM 7528", "accession": "GCA_002327185.1", "taxid": 46867, "species_taxid": 46867, "relation_to_type": "type", "validated": true, "ani": 77.597, "matched_fragments": 262, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium moniliforme", "strain": "strain=DSM 3984", "accession": "GCA_017873235.1", "taxid": 39489, "species_taxid": 39489, "relation_to_type": "type", "validated": true, "ani": 77.4901, "matched_fragments": 263, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium celatum", "strain": "strain=DSM 1785", "accession": "GCA_000320405.1", "taxid": 36834, "species_taxid": 36834, "relation_to_type": "type", "validated": true, "ani": 77.3937, "matched_fragments": 249, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cagae", "strain": "strain=Marseille-P4344", "accession": "GCA_900290265.1", "taxid": 2080751, "species_taxid": 2080751, "relation_to_type": "type", "validated": true, "ani": 77.195, "matched_fragments": 231, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 77.182, "matched_fragments": 249, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium polyendosporum", "strain": "strain=JCM 30710", "accession": "GCA_018332455.1", "taxid": 69208, "species_taxid": 69208, "relation_to_type": "type", "validated": true, "ani": 77.0979, "matched_fragments": 168, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium nigeriense", "strain": "strain=Marseille-P2414", "accession": "GCA_900086595.1", "taxid": 1805470, "species_taxid": 1805470, "relation_to_type": "type", "validated": true, "ani": 77.0529, "matched_fragments": 259, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gelidum", "strain": "strain=C5S11", "accession": "GCA_019977655.1", "taxid": 704125, "species_taxid": 704125, "relation_to_type": "type", "validated": true, "ani": 76.7523, "matched_fragments": 200, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium faecium", "strain": "strain=N37", "accession": "GCA_014836835.1", "taxid": 2762223, "species_taxid": 2762223, "relation_to_type": "type", "validated": true, "ani": 76.2403, "matched_fragments": 154, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 793", "accession": "GCA_002006235.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.9762, "matched_fragments": 140, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 7320", "accession": "GCA_002006215.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.9264, "matched_fragments": 142, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 794", "accession": "GCA_002006355.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.919, "matched_fragments": 142, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium homopropionicum", "strain": "strain=DSM 5847", "accession": "GCA_900113195.1", "taxid": 36844, "species_taxid": 36844, "relation_to_type": "type", "validated": true, "ani": 75.7696, "matched_fragments": 85, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000013285.1", "gtdb_species": "s__Clostridium_P perfringens", "ani": 98.1646, "matched_fragments": 992, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "95.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 315, "status": "conclusive" }, { "accession": "GCF_009295725.1", "gtdb_species": "s__Clostridium_P tarantellae", "ani": 78.3027, "matched_fragments": 362, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900456775.1", "gtdb_species": "s__Clostridium_P ventriculi", "ani": 77.9556, "matched_fragments": 226, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_016907995.1", "gtdb_species": "s__Clostridium sardiniense", "ani": 77.9053, "matched_fragments": 297, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001403635.1", "gtdb_species": "s__Clostridium_P massiliamazoniense", "ani": 77.8247, "matched_fragments": 308, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000498355.1", "gtdb_species": "s__Clostridium sp000498355", "ani": 77.8213, "matched_fragments": 314, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900547475.1", "gtdb_species": "s__Clostridium sp900547475", "ani": 77.7861, "matched_fragments": 259, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900091705.1", "gtdb_species": "s__Clostridium_P mediterraneense", "ani": 77.7733, "matched_fragments": 274, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002050515.1", "gtdb_species": "s__Clostridium thermobutyricum", "ani": 77.7018, "matched_fragments": 281, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900129365.1", "gtdb_species": "s__Clostridium_AH fallax", "ani": 77.6896, "matched_fragments": 269, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AH", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002327185.1", "gtdb_species": "s__Clostridium chauvoei", "ani": 77.6336, "matched_fragments": 259, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_017873235.1", "gtdb_species": "s__Clostridium moniliforme", "ani": 77.465, "matched_fragments": 266, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000320405.1", "gtdb_species": "s__Clostridium celatum", "ani": 77.3937, "matched_fragments": 249, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015555905.1", "gtdb_species": "s__Clostridium sp015555905", "ani": 77.3441, "matched_fragments": 252, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900543325.1", "gtdb_species": "s__Clostridium sp900543325", "ani": 77.3379, "matched_fragments": 215, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900447045.1", "gtdb_species": "s__Clostridium paraputrificum", "ani": 77.305, "matched_fragments": 210, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCA_017435645.1", "gtdb_species": "s__Clostridium sp017435645", "ani": 77.2864, "matched_fragments": 125, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900540255.1", "gtdb_species": "s__Clostridium sp900540255", "ani": 77.2161, "matched_fragments": 221, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_017873245.1", "gtdb_species": "s__Clostridium tertium", "ani": 77.1712, "matched_fragments": 250, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_018332455.1", "gtdb_species": "s__Clostridium_AR polyendosporum", "ani": 77.1234, "matched_fragments": 168, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AR", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900086595.1", "gtdb_species": "s__Clostridium nigeriense", "ani": 77.0645, "matched_fragments": 258, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000435835.1", "gtdb_species": "s__Clostridium sp000435835", "ani": 76.9006, "matched_fragments": 167, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_015058405.1", "gtdb_species": "s__Clostridium sp015058405", "ani": 76.71, "matched_fragments": 205, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686705.1", "gtdb_species": "s__Clostridium_Z hydrogeniformans", "ani": 76.1335, "matched_fragments": 186, "total_fragments": 1123, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_Z", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.113, "doubling_h": -0.568, "growth_tmp": 40.333, "optimum_tmp": 37.0, "optimum_ph": 6.947, "genome_size": 3407398.591, "gc_content": 27.58, "coding_genes": 2869.882, "rRNA16S_genes": 9.333, "tRNA_genes": 94.357, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Clostridiales", "f__Clostridiaceae", "g__Sarcina", "s__Sarcina perfringens" ], "_genome_taxon": [ "Clostridium", "perfringens", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Clostridiales", "f__Clostridiaceae", "g__Sarcina", "s__Sarcina perfringens", "Bacteria", "Bacillota", "A", "Clostridia", "Clostridiales", "Clostridiaceae", "Sarcina", "Sarcina", "perfringens" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }