{ "type": "genome", "identifier": "GCA_001913955.1", "organism": "Corynebacterium sp. S1S1", "title": "Corynebacterium sp. S1S1", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001913955.1", "bioproject": "PRJNA327106", "biosample": "SAMN05509310", "wgs_master": "MKXS00000000.1", "refseq_category": "na", "taxid": "1881619", "species_taxid": "1881619", "organism_name": "Corynebacterium sp. S1S1", "infraspecific_name": "", "isolate": "0123W_59_121", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/22", "asm_name": "ASM191395v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/913/955/GCA_001913955.1_ASM191395v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-22", "dateModified": "2016-12-22", "datePublished": "2016-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium sp. S1S1" ], "sample_taxid": [ "1881619" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.687 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2411790", "Number of Sequences": "21", "Longest Sequences (bp)": "389436", "N50 (bp)": "191857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "2109", "Average Protein Length": "336.0", "Coding Ratio (%)": "88.1", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium amycolatum", "strain": "strain=FDAARGOS_1189", "accession": "GCA_016889425.1", "taxid": 43765, "species_taxid": 43765, "relation_to_type": "type", "validated": true, "ani": 95.2079, "matched_fragments": 746, "total_fragments": 793, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium amycolatum", "strain": "strain=LK23", "accession": "GCA_014335175.1", "taxid": 43765, "species_taxid": 43765, "relation_to_type": "type", "validated": true, "ani": 95.1771, "matched_fragments": 745, "total_fragments": 793, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium lactis", "strain": "strain=RW2-5", "accession": "GCA_001274895.1", "taxid": 1231000, "species_taxid": 1231000, "relation_to_type": "type", "validated": true, "ani": 80.0056, "matched_fragments": 410, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=FDAARGOS 1426", "accession": "GCA_019047805.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 78.919, "matched_fragments": 258, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=DSM 44506", "accession": "GCA_017876455.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 78.7618, "matched_fragments": 252, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium xerosis", "strain": "strain=NBRC 16721", "accession": "GCA_001552415.1", "taxid": 1725, "species_taxid": 1725, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2522, "matched_fragments": 261, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=DSM 40034", "accession": "GCA_024171805.1", "taxid": 68170, 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"mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 42, "status": "inconclusive" }, { "accession": "GCF_016889425.1", "gtdb_species": "s__Corynebacterium amycolatum", "ani": 95.2079, "matched_fragments": 746, "total_fragments": 793, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "95.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 32, "status": "inconclusive" }, { "accession": "GCF_001054325.1", "gtdb_species": "s__Corynebacterium vitaeruminis_A", "ani": 91.6818, "matched_fragments": 727, "total_fragments": 793, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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