{
    "tc_result": [
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_000734955.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
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            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_000690815.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 98.6441,
            "matched_fragments": 1485,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_003697165.2",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 98.6421,
            "matched_fragments": 1478,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_024519395.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 98.3771,
            "matched_fragments": 1460,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=NCTC12984",
            "accession": "GCA_900457155.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 96.4691,
            "matched_fragments": 1282,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=ATCC 29930",
            "accession": "GCA_002950395.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 96.4213,
            "matched_fragments": 1270,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella flexneri 2a",
            "strain": "strain=ATCC 29903",
            "accession": "GCA_002950215.1",
            "taxid": 42897,
            "species_taxid": 623,
            "relation_to_type": "type",
            "validated": true,
            "ani": 96.2989,
            "matched_fragments": 1258,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=FDAARGOS_1139",
            "accession": "GCA_016726285.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 96.2197,
            "matched_fragments": 1210,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=ATCC 13313",
            "accession": "GCA_002949675.1",
            "taxid": 622,
            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 95.9954,
            "matched_fragments": 1184,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=NBRC 107761",
            "accession": "GCA_000759775.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
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            "ani": 90.1818,
            "matched_fragments": 1097,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=DSM 17582",
            "accession": "GCA_022833075.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
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            "ani": 89.9685,
            "matched_fragments": 1207,
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            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Citrobacter rodentium",
            "strain": "strain=DSM 16636",
            "accession": "GCA_021278985.1",
            "taxid": 67825,
            "species_taxid": 67825,
            "relation_to_type": "type",
            "validated": true,
            "ani": 82.4512,
            "matched_fragments": 948,
            "total_fragments": 1620,
            "ani_threshold": 95,
            "status": "below_threshold"
        }
    ],
    "cc_result": {
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0
    },
    "gtdb_result": [
        {
            "accession": "GCF_003697165.2",
            "gtdb_species": "s__Escherichia coli",
            "ani": 98.6523,
            "matched_fragments": 1477,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.07",
            "min_intra_species_ani": "95.57",
            "mean_intra_species_af": "0.85",
            "min_intra_species_af": "0.72",
            "num_clustered_genomes": 26859,
            "status": "conclusive"
        },
        {
            "accession": "GCF_002965065.1",
            "gtdb_species": "s__Escherichia sp002965065",
            "ani": 94.2024,
            "matched_fragments": 1121,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_902498915.1",
            "gtdb_species": "s__Escherichia ruysiae",
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            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.82",
            "min_intra_species_ani": "96.45",
            "mean_intra_species_af": "0.94",
            "min_intra_species_af": "0.86",
            "num_clustered_genomes": 36,
            "status": "-"
        },
        {
            "accession": "GCF_004211955.1",
            "gtdb_species": "s__Escherichia sp004211955",
            "ani": 92.7537,
            "matched_fragments": 1238,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "100.00",
            "min_intra_species_ani": "100.00",
            "mean_intra_species_af": "1.00",
            "min_intra_species_af": "1.00",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCF_005843885.1",
            "gtdb_species": "s__Escherichia sp005843885",
            "ani": 92.5784,
            "matched_fragments": 1302,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "96.83",
            "min_intra_species_ani": "95.39",
            "mean_intra_species_af": "0.87",
            "min_intra_species_af": "0.80",
            "num_clustered_genomes": 37,
            "status": "-"
        },
        {
            "accession": "GCF_011881725.1",
            "gtdb_species": "s__Escherichia coli_E",
            "ani": 92.26,
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            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_001660175.1",
            "gtdb_species": "s__Escherichia sp001660175",
            "ani": 91.7274,
            "matched_fragments": 1267,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.53",
            "min_intra_species_ani": "99.22",
            "mean_intra_species_af": "0.94",
            "min_intra_species_af": "0.92",
            "num_clustered_genomes": 3,
            "status": "-"
        },
        {
            "accession": "GCF_000026225.1",
            "gtdb_species": "s__Escherichia fergusonii",
            "ani": 91.0872,
            "matched_fragments": 1082,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.80",
            "min_intra_species_ani": "98.39",
            "mean_intra_species_af": "0.93",
            "min_intra_species_af": "0.89",
            "num_clustered_genomes": 77,
            "status": "-"
        },
        {
            "accession": "GCF_002900365.1",
            "gtdb_species": "s__Escherichia marmotae",
            "ani": 90.8861,
            "matched_fragments": 1271,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.02",
            "min_intra_species_ani": "98.77",
            "mean_intra_species_af": "0.90",
            "min_intra_species_af": "0.85",
            "num_clustered_genomes": 82,
            "status": "-"
        },
        {
            "accession": "GCF_000759775.1",
            "gtdb_species": "s__Escherichia albertii",
            "ani": 90.1506,
            "matched_fragments": 1100,
            "total_fragments": 1620,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.47",
            "min_intra_species_ani": "97.95",
            "mean_intra_species_af": "0.90",
            "min_intra_species_af": "0.82",
            "num_clustered_genomes": 107,
            "status": "-"
        }
    ]
}