{ "tc_result": [ { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 76.7608, "matched_fragments": 130, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdaerophilum calidifontis", "strain": "strain=SYSU G02060", "accession": "GCA_008641065.1", "taxid": 2604328, "species_taxid": 2604328, "relation_to_type": "type", "validated": true, "ani": 76.6146, "matched_fragments": 138, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.5549, "matched_fragments": 151, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"relation_to_type": "type", "validated": true, "ani": 76.2968, "matched_fragments": 146, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia soli", "strain": "strain=DSM 19436", "accession": "GCA_900129325.1", "taxid": 446684, "species_taxid": 446684, "relation_to_type": "type", "validated": true, "ani": 76.2575, "matched_fragments": 103, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter oligotrophicus", "strain": "strain=29k", "accession": "GCA_008364685.1", "taxid": 2607286, "species_taxid": 2607286, "relation_to_type": "type", "validated": true, "ani": 76.24, "matched_fragments": 100, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.2309, "matched_fragments": 108, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium oxalatiphilum", "strain": "strain=CCM 7897", "accession": "GCA_014635325.1", "taxid": 980631, "species_taxid": 980631, "relation_to_type": "type", "validated": true, "ani": 76.2017, "matched_fragments": 122, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum podarium", "strain": "strain=DSM 15083", "accession": "GCA_022179745.1", "taxid": 200476, "species_taxid": 200476, "relation_to_type": "type", "validated": true, "ani": 76.1863, "matched_fragments": 88, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 76.1554, "matched_fragments": 90, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter cathodiphilus", "strain": "strain=S-12", "accession": "GCA_003008515.1", "taxid": 1868589, "species_taxid": 1868589, "relation_to_type": "type", "validated": true, "ani": 76.1483, "matched_fragments": 140, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.1444, "matched_fragments": 115, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 76.115, "matched_fragments": 133, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.0853, "matched_fragments": 102, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_003258905.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_900102695.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_016584015.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.0586, "matched_fragments": 103, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 76.0418, "matched_fragments": 98, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium caulinodans", "strain": "strain=ORS 571", "accession": "GCA_000010525.1", "taxid": 7, "species_taxid": 7, "relation_to_type": "type", "validated": true, "ani": 76.0326, "matched_fragments": 128, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 76.0024, "matched_fragments": 149, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrobacter hamburgensis", "strain": "strain=X14", "accession": "GCA_000013885.1", "taxid": 912, "species_taxid": 912, "relation_to_type": "type", "validated": true, "ani": 75.9144, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 75.846, "matched_fragments": 88, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium adhaesivum", "strain": "strain=DSM 17169", "accession": "GCA_022179065.1", "taxid": 333297, "species_taxid": 333297, "relation_to_type": "type", "validated": true, "ani": 75.8037, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus asaccharovorans", "strain": "strain=DSM 6462", "accession": "GCA_003201475.1", "taxid": 28210, "species_taxid": 28210, "relation_to_type": "type", "validated": true, "ani": 75.7754, "matched_fragments": 107, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus asaccharovorans", "strain": "strain=DSM 6462", "accession": "GCA_018398275.1", "taxid": 28210, "species_taxid": 28210, "relation_to_type": "type", "validated": true, "ani": 75.7503, "matched_fragments": 109, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002365175.1", "gtdb_species": "s__UBA4765 sp002365175", "ani": 99.924, "matched_fragments": 953, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__UBA4765;g__UBA4765", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_003046185.1", "gtdb_species": "s__Phreatobacter oligotrophus", "ani": 76.5549, "matched_fragments": 151, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002982075.1", "gtdb_species": "s__Labrys okinawensis", "ani": 76.4804, "matched_fragments": 136, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Labraceae;g__Labrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000017645.1", "gtdb_species": "s__Xanthobacter autotrophicus", "ani": 76.4539, "matched_fragments": 105, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "97.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016716745.1", "gtdb_species": "s__GCA-013693735 sp016716745", "ani": 76.4336, "matched_fragments": 158, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__GCA-013693735", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005160265.1", "gtdb_species": "s__Phreatobacter sp005160265", "ani": 76.4057, "matched_fragments": 154, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018390555.1", "gtdb_species": "s__Ancylobacter_B oerskovii", "ani": 76.3021, "matched_fragments": 147, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016185205.1", "gtdb_species": "s__Pseudolabrys sp016185205", "ani": 76.2714, "matched_fragments": 100, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129325.1", "gtdb_species": "s__Kaistia soli", "ani": 76.2575, "matched_fragments": 103, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012517025.1", "gtdb_species": "s__Pinisolibacter sp012517025", "ani": 76.2426, "matched_fragments": 81, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Ancalomicrobiaceae;g__Pinisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008364685.1", "gtdb_species": "s__Xanthobacter sp008364685", "ani": 76.24, "matched_fragments": 100, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898965.1", "gtdb_species": "s__28-YEA-48 sp001898965", "ani": 76.2375, "matched_fragments": 131, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__28-YEA-48", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016219575.1", "gtdb_species": "s__Bradyrhizobium 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