{ "type": "genome", "identifier": "GCA_002083445.1", "organism": "Proteobacteria bacterium SG_bin8", "title": "Proteobacteria bacterium SG_bin8", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002083445.1", "bioproject": "PRJNA315256", "biosample": "SAMN04606796", "wgs_master": "LWDL00000000.1", "refseq_category": "na", "taxid": "1827387", "species_taxid": "1827387", "organism_name": "Proteobacteria bacterium SG_bin8", "infraspecific_name": "", "isolate": "SG_bin8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/10", "asm_name": "ASM208344v1", "submitter": "The University Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/083/445/GCA_002083445.1_ASM208344v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-10", "dateModified": "2017-04-10", "datePublished": "2017-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Proteobacteria bacterium SG_bin8" ], "sample_taxid": [ "1827387" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Singapore: National University of Singapore" ], "sample_host_location_id": [], "data_size": "0.848 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3025501", "Number of Sequences": "33", "Longest Sequences (bp)": "415740", "N50 (bp)": "147445", "Gap Ratio (%)": "0.027566", "GCcontent (%)": "61.0", "Number of CDSs": "2888", "Average Protein Length": "316.2", "Coding Ratio (%)": "90.6", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 76.7608, "matched_fragments": 130, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdaerophilum calidifontis", "strain": "strain=SYSU G02060", "accession": "GCA_008641065.1", "taxid": 2604328, "species_taxid": 2604328, "relation_to_type": "type", "validated": true, "ani": 76.6146, "matched_fragments": 138, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.5549, "matched_fragments": 151, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 76.4748, "matched_fragments": 128, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 76.4608, "matched_fragments": 134, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter stygius", "strain": "strain=KCTC 52518", "accession": "GCA_005144885.1", "taxid": 1940610, "species_taxid": 1940610, "relation_to_type": "type", "validated": true, "ani": 76.4537, "matched_fragments": 172, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 76.4351, "matched_fragments": 146, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.3218, "matched_fragments": 130, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia insulae", "strain": "strain=DS-56", "accession": "GCA_000970465.2", "taxid": 408174, "species_taxid": 408174, "relation_to_type": "type", "validated": true, "ani": 76.3075, "matched_fragments": 66, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 76.2968, "matched_fragments": 146, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia soli", "strain": "strain=DSM 19436", "accession": "GCA_900129325.1", "taxid": 446684, "species_taxid": 446684, "relation_to_type": "type", "validated": true, "ani": 76.2575, "matched_fragments": 103, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter oligotrophicus", "strain": "strain=29k", "accession": "GCA_008364685.1", "taxid": 2607286, "species_taxid": 2607286, "relation_to_type": "type", "validated": true, "ani": 76.24, "matched_fragments": 100, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.2309, "matched_fragments": 108, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium oxalatiphilum", "strain": "strain=CCM 7897", "accession": "GCA_014635325.1", "taxid": 980631, "species_taxid": 980631, "relation_to_type": "type", "validated": true, "ani": 76.2017, "matched_fragments": 122, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum podarium", "strain": "strain=DSM 15083", "accession": "GCA_022179745.1", "taxid": 200476, "species_taxid": 200476, "relation_to_type": "type", "validated": true, "ani": 76.1863, "matched_fragments": 88, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 76.1554, "matched_fragments": 90, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter cathodiphilus", "strain": "strain=S-12", "accession": "GCA_003008515.1", "taxid": 1868589, "species_taxid": 1868589, "relation_to_type": "type", "validated": true, "ani": 76.1483, "matched_fragments": 140, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.1444, "matched_fragments": 115, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 76.115, "matched_fragments": 133, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.0853, "matched_fragments": 102, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_003258905.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_900102695.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella marina", "strain": "strain=DSM 2698", "accession": "GCA_016584015.1", "taxid": 1080, "species_taxid": 1080, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.0586, "matched_fragments": 103, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 76.0418, "matched_fragments": 98, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium caulinodans", "strain": "strain=ORS 571", "accession": "GCA_000010525.1", "taxid": 7, "species_taxid": 7, "relation_to_type": "type", "validated": true, "ani": 76.0326, "matched_fragments": 128, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 76.0024, "matched_fragments": 149, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrobacter hamburgensis", "strain": "strain=X14", "accession": "GCA_000013885.1", "taxid": 912, "species_taxid": 912, "relation_to_type": "type", "validated": true, "ani": 75.9144, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 75.846, "matched_fragments": 88, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium adhaesivum", "strain": "strain=DSM 17169", "accession": "GCA_022179065.1", "taxid": 333297, "species_taxid": 333297, "relation_to_type": "type", "validated": true, "ani": 75.8037, "matched_fragments": 69, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus asaccharovorans", "strain": "strain=DSM 6462", "accession": "GCA_003201475.1", "taxid": 28210, "species_taxid": 28210, "relation_to_type": "type", "validated": true, "ani": 75.7754, "matched_fragments": 107, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus asaccharovorans", "strain": "strain=DSM 6462", "accession": "GCA_018398275.1", "taxid": 28210, "species_taxid": 28210, "relation_to_type": "type", "validated": true, "ani": 75.7503, "matched_fragments": 109, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002365175.1", "gtdb_species": "s__UBA4765 sp002365175", "ani": 99.924, "matched_fragments": 953, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__UBA4765;g__UBA4765", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_003046185.1", "gtdb_species": "s__Phreatobacter oligotrophus", "ani": 76.5549, "matched_fragments": 151, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002982075.1", "gtdb_species": "s__Labrys okinawensis", "ani": 76.4804, "matched_fragments": 136, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Labraceae;g__Labrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000017645.1", "gtdb_species": "s__Xanthobacter autotrophicus", "ani": 76.4539, "matched_fragments": 105, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017872635.1", "gtdb_species": "s__Starkeya sp017872635", "ani": 76.444, "matched_fragments": 124, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900102525.1", "gtdb_species": "s__Bosea robiniae", "ani": 76.4351, "matched_fragments": 146, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016716745.1", "gtdb_species": "s__GCA-013693735 sp016716745", "ani": 76.4336, "matched_fragments": 158, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__GCA-013693735", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005160265.1", "gtdb_species": "s__Phreatobacter sp005160265", "ani": 76.4057, "matched_fragments": 154, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012971745.1", "gtdb_species": "s__ORNL1 sp012971745", "ani": 76.3791, "matched_fragments": 135, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__ORNL1", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000970465.2", "gtdb_species": "s__Devosia_A insulae", "ani": 76.3075, "matched_fragments": 66, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018390555.1", "gtdb_species": "s__Ancylobacter_B oerskovii", "ani": 76.3021, "matched_fragments": 147, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016185205.1", "gtdb_species": "s__Pseudolabrys sp016185205", "ani": 76.2714, "matched_fragments": 100, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129325.1", "gtdb_species": "s__Kaistia soli", "ani": 76.2575, "matched_fragments": 103, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012517025.1", "gtdb_species": "s__Pinisolibacter sp012517025", "ani": 76.2426, "matched_fragments": 81, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Ancalomicrobiaceae;g__Pinisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008364685.1", "gtdb_species": "s__Xanthobacter sp008364685", "ani": 76.24, "matched_fragments": 100, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898965.1", "gtdb_species": "s__28-YEA-48 sp001898965", "ani": 76.2375, "matched_fragments": 131, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__28-YEA-48", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016219575.1", "gtdb_species": "s__Bradyrhizobium sp016219575", "ani": 76.2334, "matched_fragments": 126, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014635325.1", "gtdb_species": "s__Azorhizobium oxalatiphilum", "ani": 76.1889, "matched_fragments": 123, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Azorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017304555.1", "gtdb_species": "s__JAFKKS01 sp017304555", "ani": 76.1843, "matched_fragments": 77, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__JAFKKS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000473085.1", "gtdb_species": "s__Azorhizobium doebereinerae", "ani": 76.0993, "matched_fragments": 136, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Azorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102695.1", "gtdb_species": "s__Afifella marina", "ani": 76.0695, "matched_fragments": 69, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Afifellaceae;g__Afifella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000010525.1", "gtdb_species": "s__Azorhizobium caulinodans", "ani": 76.0326, "matched_fragments": 128, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Azorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015624485.1", "gtdb_species": "s__Bradyrhizobium sp015624485", "ani": 76.0193, "matched_fragments": 139, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907975.1", "gtdb_species": "s__Methylopila capsulata", "ani": 76.0056, "matched_fragments": 91, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003173755.1", "gtdb_species": "s__Methylobacterium terrae", "ani": 76.004, "matched_fragments": 115, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017307495.1", "gtdb_species": "s__Devosia_A sp017307495", "ani": 75.8672, "matched_fragments": 62, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018130505.1", "gtdb_species": "s__Bradyrhizobium tropiciagri_B", "ani": 75.81, "matched_fragments": 131, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015655535.1", "gtdb_species": "s__Methyloferula sp015655535", "ani": 75.6877, "matched_fragments": 50, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methyloferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006376685.1", "gtdb_species": "s__Ochrobactrum_B teleogrylli", "ani": 75.3622, "matched_fragments": 64, "total_fragments": 993, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__UBA4765", "g__UBA4765", "s__UBA4765 sp002365175" ], "_genome_taxon": [ "Proteobacteria", "bacterium", "SG_bin8", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__UBA4765", "g__UBA4765", "s__UBA4765 sp002365175", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhizobiales", "UBA4765", "UBA4765", "UBA4765", "sp002365175" ], "_meo": [ { "id": "MEO_0001195", "label": "biofilter" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }