{ "type": "genome", "identifier": "GCA_002279705.1", "organism": "Bosea sp. 12-68-7", "title": "Bosea sp. 12-68-7", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002279705.1", "bioproject": "PRJNA379596", "biosample": "SAMN06622396", "wgs_master": "NCCO00000000.1", "refseq_category": "na", "taxid": "1970324", "species_taxid": "1970324", "organism_name": "Bosea sp. 12-68-7", "infraspecific_name": "", "isolate": "12-68-7", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/16", "asm_name": "ASM227970v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/279/705/GCA_002279705.1_ASM227970v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-16", "dateModified": "2017-08-16", "datePublished": "2017-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bosea sp. 12-68-7" ], "sample_taxid": [ "1970324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ontario" ], "sample_host_location_id": [], "data_size": "1.248 MB", "sample_ph_range": { "min": 723.0, "max": 723.0 }, "sample_temperature_range": { "min": 813.0, "max": 813.0 }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4569382", "Number of Sequences": "312", "Longest Sequences (bp)": "66571", "N50 (bp)": "22269", "Gap Ratio (%)": "0.068609", "GCcontent (%)": "68.0", "Number of CDSs": "4375", "Average Protein Length": "286.7", "Coding Ratio (%)": "82.3", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bosea psychrotolerans", "strain": "strain=1131", "accession": "GCA_002917105.1", "taxid": 1871628, "species_taxid": 1871628, "relation_to_type": "type", "validated": true, "ani": 83.7848, "matched_fragments": 927, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea vaviloviae", "strain": "strain=Vaf18", "accession": "GCA_001741865.1", "taxid": 1526658, "species_taxid": 1526658, "relation_to_type": "type", "validated": true, "ani": 83.7342, "matched_fragments": 942, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea caraganae", "strain": "strain=RCAM 04680", "accession": "GCA_003351345.1", "taxid": 2763117, "species_taxid": 2763117, "relation_to_type": "type", "validated": true, "ani": 83.7188, "matched_fragments": 936, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 83.6153, "matched_fragments": 876, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea lathyri", "strain": "strain=DSM 26656", "accession": "GCA_900108245.1", "taxid": 1036778, "species_taxid": 1036778, "relation_to_type": "type", "validated": true, "ani": 83.4293, "matched_fragments": 885, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 83.3009, "matched_fragments": 860, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 78.2455, "matched_fragments": 561, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 78.133, "matched_fragments": 514, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 78.0651, "matched_fragments": 575, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 77.9967, "matched_fragments": 502, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 77.9062, "matched_fragments": 444, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 77.7732, "matched_fragments": 433, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium iners", "strain": "strain=DSM 19015", "accession": "GCA_022179305.1", "taxid": 418707, "species_taxid": 418707, "relation_to_type": "type", "validated": true, "ani": 77.7567, "matched_fragments": 406, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=DSM 24027", "accession": "GCA_022179205.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 77.7073, "matched_fragments": 315, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=KCTC 22810", "accession": "GCA_022179555.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 77.6262, "matched_fragments": 356, "total_fragments": 1368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium doebereinerae", "strain": "strain=UFLA1-100", "accession": 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