{ "type": "genome", "identifier": "GCA_002280035.1", "organism": "Pseudomonadales bacterium 32-61-5", "title": "Pseudomonadales bacterium 32-61-5", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002280035.1", "bioproject": "PRJNA379596", "biosample": "SAMN06622379", "wgs_master": "NCDF00000000.1", "refseq_category": "na", "taxid": "1970544", "species_taxid": "1970544", "organism_name": "Pseudomonadales bacterium 32-61-5", "infraspecific_name": "", "isolate": "32-61-5", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/16", "asm_name": "ASM228003v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/280/035/GCA_002280035.1_ASM228003v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-16", "dateModified": "2017-08-16", "datePublished": "2017-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium 32-61-5" ], "sample_taxid": [ "1970544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ontario" ], "sample_host_location_id": [], "data_size": "0.670 MB", "sample_ph_range": { "min": 666.0, "max": 666.0 }, "sample_temperature_range": { "min": 728.0, "max": 728.0 }, "completeness": 43.63, "contamination": 1.52, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2321968", "Number of Sequences": "1213", "Longest Sequences (bp)": "10689", "N50 (bp)": "2051", "Gap Ratio (%)": "0.073171", "GCcontent (%)": "61.1", "Number of CDSs": "1372", "Average Protein Length": "224.9", "Coding Ratio (%)": "39.9", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas saudiphocaensis", "strain": "strain=20_BN", "accession": "GCA_000756775.2", "taxid": 1499686, "species_taxid": 1499686, "relation_to_type": "type", "validated": true, "ani": 84.6973, "matched_fragments": 129, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, "ani": 83.3596, "matched_fragments": 122, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 82.4436, "matched_fragments": 119, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 82.4324, "matched_fragments": 118, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 81.9626, "matched_fragments": 110, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 81.9586, "matched_fragments": 109, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_024448335.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 81.9586, "matched_fragments": 109, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=NEAU-ST5-5", "accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 81.935, "matched_fragments": 103, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=DSM 27560T", "accession": "GCA_024448495.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 81.9067, "matched_fragments": 103, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas xanthomarina", "strain": "strain=DSM 18231", "accession": "GCA_024328335.1", "taxid": 271420, "species_taxid": 271420, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0798, "matched_fragments": 106, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas xanthomarina", "strain": "strain=DSM 18231", "accession": "GCA_900129835.1", "taxid": 271420, "species_taxid": 271420, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0533, "matched_fragments": 108, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 80.8294, "matched_fragments": 101, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 80.8027, "matched_fragments": 66, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 80.3209, "matched_fragments": 85, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 80.1831, "matched_fragments": 70, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] zhaodongensis", "strain": "strain=DSM 27559T", "accession": "GCA_024448735.1", "taxid": 1176257, "species_taxid": 1176257, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0742, "matched_fragments": 97, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 79.8124, "matched_fragments": 79, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kuykendallii", "strain": "strain=NRRL B-59562", "accession": "GCA_900106975.1", "taxid": 1007099, "species_taxid": 1007099, "relation_to_type": "type", "validated": true, "ani": 79.745, "matched_fragments": 85, "total_fragments": 168, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 43.63, "contamination": 1.52, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_002331645.1", "gtdb_species": "s__Pseudomonas_A stutzeri_T", "ani": 98.091, "matched_fragments": 142, "total_fragments": 168, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_013522825.1", "gtdb_species": "s__Pseudomonas_A stutzeri_AK", "ani": 88.417, "matched_fragments": 143, "total_fragments": 168, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, 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"\u2b50\ufe0f\u2b50\ufe0f" }