{ "type": "genome", "identifier": "GCA_002280595.1", "organism": "Comamonadaceae bacterium 32-67-11", "title": "Comamonadaceae bacterium 32-67-11", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002280595.1", "bioproject": "PRJNA379596", "biosample": "SAMN06622352", "wgs_master": "NCEG00000000.1", "refseq_category": "na", "taxid": "1970505", "species_taxid": "1970505", "organism_name": "Comamonadaceae bacterium 32-67-11", "infraspecific_name": "", "isolate": "32-67-11", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/16", "asm_name": "ASM228059v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/280/595/GCA_002280595.1_ASM228059v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-16", "dateModified": "2017-08-16", "datePublished": "2017-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonadaceae bacterium 32-67-11" ], "sample_taxid": [ "1970505" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ontario" ], "sample_host_location_id": [], "data_size": "0.598 MB", "sample_ph_range": { "min": 766.0, "max": 766.0 }, "sample_temperature_range": { "min": 1589.0, "max": 1589.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2186379", "Number of Sequences": "276", "Longest Sequences (bp)": "48231", "N50 (bp)": "13482", "Gap Ratio (%)": "0.022091", "GCcontent (%)": "66.8", "Number of CDSs": "1834", "Average Protein Length": "308.0", "Coding Ratio (%)": "77.5", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serpentinimonas maccroryi", "strain": "strain=B1", "accession": "GCA_000828915.1", "taxid": 1458426, "species_taxid": 1458426, "relation_to_type": "type", "validated": true, "ani": 98.4337, "matched_fragments": 562, "total_fragments": 589, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serpentinimonas raichei", "strain": "strain=A1", "accession": "GCA_000828895.1", "taxid": 1458425, "species_taxid": 1458425, "relation_to_type": "type", "validated": true, "ani": 88.113, "matched_fragments": 518, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serpentinimonas barnesii", "strain": "strain=H1", "accession": 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"status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 78.4602, "matched_fragments": 282, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 77.6612, "matched_fragments": 249, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 77.3947, "matched_fragments": 201, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"f__Burkholderiaceae", "g__Serpentinimonas", "s__Serpentinimonas maccroryi", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Serpentinimonas", "Serpentinimonas", "maccroryi" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }