{ "type": "genome", "identifier": "GCA_002281915.1", "organism": "Burkholderiales bacterium 24-55-52", "title": "Burkholderiales bacterium 24-55-52", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002281915.1", "bioproject": "PRJNA379596", "biosample": "SAMN06622262", "wgs_master": "NCHS00000000.1", "refseq_category": "na", "taxid": "1970496", "species_taxid": "1970496", "organism_name": "Burkholderiales bacterium 24-55-52", "infraspecific_name": "", "isolate": "24-55-52", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/16", "asm_name": "ASM228191v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/281/915/GCA_002281915.1_ASM228191v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-16", "dateModified": "2017-08-16", "datePublished": "2017-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium 24-55-52" ], "sample_taxid": [ "1970496" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ontario" ], "sample_host_location_id": [], "data_size": "0.741 MB", "sample_ph_range": { "min": 766.0, "max": 766.0 }, "sample_temperature_range": { "min": 1589.0, "max": 1589.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2627188", "Number of Sequences": "27", "Longest Sequences (bp)": "1007244", "N50 (bp)": "443958", "Gap Ratio (%)": "0.002779", "GCcontent (%)": "54.6", "Number of CDSs": "2603", "Average Protein Length": "306.8", "Coding Ratio (%)": "91.2", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 86.9428, "matched_fragments": 614, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 79.5651, "matched_fragments": 326, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 78.9912, "matched_fragments": 302, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 78.8772, "matched_fragments": 303, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.7722, "matched_fragments": 217, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax aquaticus", "strain": "strain=Gr-4", "accession": "GCA_006974105.1", "taxid": 2527691, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 77.3632, "matched_fragments": 188, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 77.3132, "matched_fragments": 166, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas kerstersii", "strain": "strain=CCUG 15333", "accession": "GCA_008801935.1", "taxid": 225992, "species_taxid": 225992, "relation_to_type": "type", "validated": true, "ani": 77.2133, "matched_fragments": 188, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { 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