{ "type": "genome", "identifier": "GCA_002291855.1", "organism": "Sphingomonas sp. UBA1000", "title": "Sphingomonas sp. UBA1000", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002291855.1", "bioproject": "PRJNA348753", "biosample": "SAMN06457503", "wgs_master": "DBAW00000000.1", "refseq_category": "na", "taxid": "1947531", "species_taxid": "1947531", "organism_name": "Sphingomonas sp. UBA1000", "infraspecific_name": "", "isolate": "UBA1000", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/12", "asm_name": "ASM229185v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/291/855/GCA_002291855.1_ASM229185v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-12", "dateModified": "2017-09-12", "datePublished": "2017-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas sp. UBA1000" ], "sample_taxid": [ "1947531" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Costa Rica:Cuenca Murcielago" ], "sample_host_location_id": [], "data_size": "0.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2460204", "Number of Sequences": "282", "Longest Sequences (bp)": "35505", "N50 (bp)": "11321", "Gap Ratio (%)": "2.002110", "GCcontent (%)": "68.6", "Number of CDSs": "2063", "Average Protein Length": "302.2", "Coding Ratio (%)": "76.0", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas changnyeongensis", "strain": 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