{ "type": "genome", "identifier": "GCA_002293995.1", "organism": "Pseudomonas aeruginosa", "title": "Pseudomonas aeruginosa", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002293995.1", "bioproject": "PRJNA348753", "biosample": "SAMN06453949", "wgs_master": "DBEK00000000.1", "refseq_category": "na", "taxid": "287", "species_taxid": "287", "organism_name": "Pseudomonas aeruginosa", "infraspecific_name": "", "isolate": "UBA908", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/12", "asm_name": "ASM229399v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/293/995/GCA_002293995.1_ASM229399v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-12", "dateModified": "2017-09-12", "datePublished": "2017-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas aeruginosa" ], "sample_taxid": [ "287" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "1.695 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6188046", "Number of Sequences": "84", "Longest Sequences (bp)": "456064", "N50 (bp)": "109886", "Gap Ratio (%)": "0.074321", "GCcontent (%)": "66.7", "Number of CDSs": "5693", "Average Protein Length": "321.7", "Coding Ratio (%)": "88.8", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.3047, "matched_fragments": 1910, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_001042925.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.3047, "matched_fragments": 1910, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.2913, "matched_fragments": 1893, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=NCTC10332", "accession": "GCA_001457615.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.283, "matched_fragments": 1917, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.2805, "matched_fragments": 1911, "total_fragments": 2024, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 99.2328, "matched_fragments": 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