{ "type": "genome", "identifier": "GCA_002310195.1", "organism": "Bacteroidales bacterium UBA1180", "title": "Bacteroidales bacterium UBA1180", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002310195.1", "bioproject": "PRJNA348753", "biosample": "SAMN06452496", "wgs_master": "DBYS00000000.1", "refseq_category": "na", "taxid": "1950381", "species_taxid": "1950381", "organism_name": "Bacteroidales bacterium UBA1180", "infraspecific_name": "", "isolate": "UBA1180", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/18", "asm_name": "ASM231019v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/310/195/GCA_002310195.1_ASM231019v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-18", "dateModified": "2017-09-18", "datePublished": "2017-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidales bacterium UBA1180" ], "sample_taxid": [ "1950381" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NULL" ], "sample_host_location_id": [], "data_size": "0.561 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1963603", "Number of Sequences": "23", "Longest Sequences (bp)": "267526", "N50 (bp)": "147257", "Gap Ratio (%)": "0.185781", "GCcontent (%)": "52.4", "Number of CDSs": "1557", "Average Protein Length": "384.0", "Coding Ratio (%)": "91.3", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 81.19, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002310195.1", "gtdb_species": "s__RF16 sp002310195", "ani": 100.0, "matched_fragments": 640, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "96.21", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.73", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_017525455.1", "gtdb_species": "s__RF16 sp017525455", "ani": 82.6464, "matched_fragments": 317, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902783545.1", "gtdb_species": "s__RF16 sp902783545", "ani": 80.8619, "matched_fragments": 265, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902792835.1", "gtdb_species": "s__RF16 sp902792835", "ani": 80.7747, "matched_fragments": 256, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.43", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905233935.1", "gtdb_species": "s__RF16 sp905233935", "ani": 80.7057, "matched_fragments": 289, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900317745.1", "gtdb_species": "s__RF16 sp900317745", "ani": 80.6814, "matched_fragments": 317, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCA_017444065.1", "gtdb_species": "s__RF16 sp017444065", "ani": 80.5147, "matched_fragments": 359, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902798965.1", "gtdb_species": "s__RF16 sp902798965", "ani": 79.7064, "matched_fragments": 289, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017443075.1", "gtdb_species": "s__RF16 sp017443075", "ani": 79.3925, "matched_fragments": 242, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900317885.1", "gtdb_species": "s__RF16 sp900317885", "ani": 77.3284, "matched_fragments": 91, "total_fragments": 644, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__RF16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "96.25", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.217, "cell_length": 0.157, "doubling_h": 0.206, "growth_tmp": 36.585, "optimum_tmp": 36.041, "optimum_ph": 7.086, "genome_size": 3658719.825, "gc_content": 44.947, "coding_genes": 3043.648, "rRNA16S_genes": 4.032, "tRNA_genes": 57.661, "gram_stain": 0.014, "sporulation": 0.0, "motility": 0.04, "range_salinity": 0.0, "facultative_respiration": 0.006, "anaerobic_respiration": 0.958, "aerobic_respiration": 0.034, "mesophilic_range_tmp": 0.985, "thermophilic_range_tmp": 0.014, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.024, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.024, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Paludibacteraceae", "g__RF16", "s__RF16 sp002310195" ], "_genome_taxon": [ "Bacteroidales", "bacterium", "UBA1180", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Paludibacteraceae", "g__RF16", "s__RF16 sp002310195", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Paludibacteraceae", "RF16", "RF16", "sp002310195" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }