{ "type": "genome", "identifier": "GCA_002314435.1", "organism": "Acidobacteriaceae bacterium UBA1795", "title": "Acidobacteriaceae bacterium UBA1795", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002314435.1", "bioproject": "PRJNA348753", "biosample": "SAMN06453558", "wgs_master": "DCFV00000000.1", "refseq_category": "na", "taxid": "1951345", "species_taxid": "1951345", "organism_name": "Acidobacteriaceae bacterium UBA1795", "infraspecific_name": "", "isolate": "UBA1795", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/20", "asm_name": "ASM231443v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/314/435/GCA_002314435.1_ASM231443v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-20", "dateModified": "2017-09-20", "datePublished": "2017-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidobacteriaceae bacterium UBA1795" ], "sample_taxid": [ "1951345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NULL" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3946909", "Number of Sequences": "244", "Longest Sequences (bp)": "87522", "N50 (bp)": "25462", "Gap Ratio (%)": "2.176108", "GCcontent (%)": "61.6", "Number of CDSs": "3083", "Average Protein Length": "322.5", "Coding Ratio (%)": "75.6", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Occallatibacter riparius", "strain": "strain=DSM 25168", "accession": "GCA_025264625.1", "taxid": 1002689, "species_taxid": 1002689, "relation_to_type": "type", "validated": true, "ani": 77.6379, "matched_fragments": 328, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terracidiphilus gabretensis", "strain": "strain=S55", "accession": "GCA_001449115.1", "taxid": 1577687, "species_taxid": 1577687, "relation_to_type": "type", "validated": true, "ani": 77.3852, "matched_fragments": 228, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 76.8982, "matched_fragments": 154, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=S15", "accession": "GCA_001006305.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.7241, "matched_fragments": 147, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.6827, "matched_fragments": 147, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.6585, "matched_fragments": 174, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.6052, "matched_fragments": 174, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.6042, "matched_fragments": 178, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alloacidobacterium dinghuense", "strain": "strain=4Y35", "accession": "GCA_014274465.1", "taxid": 2763107, "species_taxid": 2763107, "relation_to_type": "type", "validated": true, "ani": 76.5458, "matched_fragments": 112, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terriglobus roseus", "strain": "strain=DSM 18391", "accession": "GCA_000265425.1", "taxid": 392734, "species_taxid": 392734, "relation_to_type": "type", "validated": true, "ani": 76.4074, "matched_fragments": 83, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 76.389, "matched_fragments": 145, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3658, "matched_fragments": 64, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter modestus", "strain": "strain=DSM 18101", "accession": "GCA_004217555.1", "taxid": 388466, "species_taxid": 388466, "relation_to_type": "type", "validated": true, "ani": 76.3614, "matched_fragments": 81, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter dinghuensis", "strain": "strain=CGMCC 1.12997", "accession": "GCA_014640335.1", "taxid": 1560005, "species_taxid": 1560005, "relation_to_type": "type", "validated": true, "ani": 76.2833, "matched_fragments": 109, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.58, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"s__Occallatibacter sp002314435", "Bacteria", "Acidobacteriota", "Terriglobia", "Terriglobales", "Acidobacteriaceae", "Occallatibacter", "Occallatibacter", "sp002314435" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }