{
    "type": "genome",
    "identifier": "GCA_002321095.1",
    "organism": "Stutzerimonas stutzeri",
    "title": "Stutzerimonas stutzeri",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002321095.1",
        "bioproject": "PRJNA348753",
        "biosample": "SAMN06451421",
        "wgs_master": "DCLO00000000.1",
        "refseq_category": "na",
        "taxid": "316",
        "species_taxid": "316",
        "organism_name": "Stutzerimonas stutzeri",
        "infraspecific_name": "",
        "isolate": "UBA1646",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/21",
        "asm_name": "ASM232109v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/321/095/GCA_002321095.1_ASM232109v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-21",
    "dateModified": "2017-09-21",
    "datePublished": "2017-09-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Stutzerimonas stutzeri"
        ],
        "sample_taxid": [
            "316"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:New York City"
        ],
        "sample_host_location_id": [],
        "data_size": "1.079 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3926473",
        "Number of Sequences": "379",
        "Longest Sequences (bp)": "52241",
        "N50 (bp)": "14224",
        "Gap Ratio (%)": "1.394687",
        "GCcontent (%)": "64.5",
        "Number of CDSs": "3313",
        "Average Protein Length": "299.6",
        "Coding Ratio (%)": "75.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Stutzerimonas stutzeri",
                "strain": "strain=CGMCC 1.1803",
                "accession": "GCA_000219605.1",
                "taxid": 316,
                "species_taxid": 316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0624,
                "matched_fragments": 1064,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Stutzerimonas stutzeri",
                "strain": "strain=FDAARGOS_875",
                "accession": "GCA_016028655.1",
                "taxid": 316,
                "species_taxid": 316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0519,
                "matched_fragments": 1065,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=DNSP21",
                "accession": "GCA_024448335.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2132,
                "matched_fragments": 973,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=FDAARGOS_877",
                "accession": "GCA_016028515.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1597,
                "matched_fragments": 975,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=DNSP21",
                "accession": "GCA_002890935.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1133,
                "matched_fragments": 964,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas songnenensis",
                "strain": "strain=DSM 27560T",
                "accession": "GCA_024448495.1",
                "taxid": 1176259,
                "species_taxid": 1176259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0927,
                "matched_fragments": 966,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas songnenensis",
                "strain": "strain=NEAU-ST5-5",
                "accession": "GCA_003696315.1",
                "taxid": 1176259,
                "species_taxid": 1176259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0417,
                "matched_fragments": 979,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas nitrititolerans",
                "strain": "strain=GL14",
                "accession": "GCA_003696285.1",
                "taxid": 2482751,
                "species_taxid": 2482751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1044,
                "matched_fragments": 756,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Pseudomonas] nosocomialis",
                "strain": "strain=A31/70",
                "accession": "GCA_005876855.1",
                "taxid": 1056496,
                "species_taxid": 1056496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5847,
                "matched_fragments": 747,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas thermotolerans",
                "strain": "strain=DSM 14292",
                "accession": "GCA_000364625.1",
                "taxid": 157784,
                "species_taxid": 157784,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8494,
                "matched_fragments": 552,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000219605.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri",
                "ani": 98.0624,
                "matched_fragments": 1064,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 156,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003205815.1",
                "gtdb_species": "s__Pseudomonas_A sp003205815",
                "ani": 90.6628,
                "matched_fragments": 971,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCF_003696315.1",
                "gtdb_species": "s__Pseudomonas_A songnenensis",
                "ani": 89.0268,
                "matched_fragments": 980,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002929225.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_U",
                "ani": 87.6531,
                "matched_fragments": 974,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 97.0711,
                "mean_intra_species_ani": "97.19",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000327065.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AE",
                "ani": 87.6161,
                "matched_fragments": 984,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.56",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000661915.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_A",
                "ani": 87.4744,
                "matched_fragments": 962,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000935215.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AD",
                "ani": 87.4367,
                "matched_fragments": 912,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 96.8359,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002890915.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AF",
                "ani": 86.9408,
                "matched_fragments": 904,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000307775.2",
                "gtdb_species": "s__Pseudomonas_A stutzeri_B",
                "ani": 86.6011,
                "matched_fragments": 906,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.65",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002890795.1",
                "gtdb_species": "s__Pseudomonas_A stutzeri_AA",
                "ani": 85.9506,
                "matched_fragments": 958,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015070855.1",
                "gtdb_species": "s__Pseudomonas_A lopnurensis",
                "ani": 85.7879,
                "matched_fragments": 875,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Pseudomonadaceae",
        "g__Stutzerimonas",
        "s__Stutzerimonas stutzeri"
    ],
    "_genome_taxon": [
        "Stutzerimonas",
        "stutzeri",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Pseudomonadaceae",
        "g__Stutzerimonas",
        "s__Stutzerimonas stutzeri",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Pseudomonadaceae",
        "Stutzerimonas",
        "Stutzerimonas",
        "stutzeri"
    ],
    "_meo": [
        {
            "id": "MEO_0000837",
            "label": "human activity associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}