{ "type": "genome", "identifier": "GCA_002322335.1", "organism": "Enterobacteriaceae bacterium UBA1576", "title": "Enterobacteriaceae bacterium UBA1576", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002322335.1", "bioproject": "PRJNA348753", "biosample": "SAMN06452374", "wgs_master": "DCOG00000000.1", "refseq_category": "na", "taxid": "1951650", "species_taxid": "1951650", "organism_name": "Enterobacteriaceae bacterium UBA1576", "infraspecific_name": "", "isolate": "UBA1576", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/21", "asm_name": "ASM232233v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/322/335/GCA_002322335.1_ASM232233v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-21", "dateModified": "2017-09-21", "datePublished": "2017-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacteriaceae bacterium UBA1576" ], "sample_taxid": [ "1951650" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "1.187 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4166092", "Number of Sequences": "344", "Longest Sequences (bp)": "55464", "N50 (bp)": "17746", "Gap Ratio (%)": "0.518568", "GCcontent (%)": "54.9", "Number of CDSs": "4325", "Average Protein Length": "256.6", "Coding Ratio (%)": "79.9", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 86.2265, "matched_fragments": 921, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 86.1579, "matched_fragments": 937, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 81.4415, "matched_fragments": 659, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 81.4077, "matched_fragments": 666, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000409325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 81.364, "matched_fragments": 653, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 81.3247, "matched_fragments": 624, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_900447325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 81.3052, "matched_fragments": 662, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter turicensis", "strain": "strain=LMG 23730", "accession": "GCA_000463155.2", "taxid": 357233, "species_taxid": 357233, "relation_to_type": "type", "validated": true, "ani": 81.187, "matched_fragments": 633, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000319325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 81.1853, "matched_fragments": 662, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 81.1427, "matched_fragments": 625, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_001277195.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 81.125, "matched_fragments": 642, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_000409285.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 81.1105, "matched_fragments": 635, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=FDAARGOS 1430", "accession": "GCA_019047025.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.0348, "matched_fragments": 612, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.9803, "matched_fragments": 630, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_001729805.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 80.917, "matched_fragments": 617, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9131, "matched_fragments": 645, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 80.8897, "matched_fragments": 619, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 80.6505, "matched_fragments": 593, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 80.5632, "matched_fragments": 599, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.5503, "matched_fragments": 638, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 80.4669, "matched_fragments": 608, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_017348915.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 80.3529, "matched_fragments": 576, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_018987305.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 80.2464, "matched_fragments": 592, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007570865.1", "gtdb_species": "s__Atlantibacter subterranea", "ani": 98.4532, "matched_fragments": 1098, "total_fragments": 1205, "gtdb_taxonomy": 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"genome_size": 4236583.282, "gc_content": 50.628, "coding_genes": 3871.934, "rRNA16S_genes": 6.166, "tRNA_genes": 75.784, "gram_stain": 0.0, "sporulation": 0.04, "motility": 0.803, "range_salinity": 0.2, "facultative_respiration": 0.392, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.607, "mesophilic_range_tmp": 0.972, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.027, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Enterobacteriaceae", "g__Atlantibacter", "s__Atlantibacter subterranea" ], "_genome_taxon": [ "Enterobacteriaceae", "bacterium", "UBA1576", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Enterobacteriaceae", "g__Atlantibacter", "s__Atlantibacter subterranea", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Atlantibacter", "Atlantibacter", "subterranea" ], "_meo": [ { "id": "MEO_0000837", "label": "human activity associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }