{
    "type": "genome",
    "identifier": "GCA_002338985.1",
    "organism": "Hafnia paralvei",
    "title": "Hafnia paralvei",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002338985.1",
        "bioproject": "PRJNA348753",
        "biosample": "SAMN06453456",
        "wgs_master": "DDJA00000000.1",
        "refseq_category": "na",
        "taxid": "546367",
        "species_taxid": "546367",
        "organism_name": "Hafnia paralvei",
        "infraspecific_name": "",
        "isolate": "UBA1836",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/22",
        "asm_name": "ASM233898v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/338/985/GCA_002338985.1_ASM233898v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-22",
    "dateModified": "2017-09-22",
    "datePublished": "2017-09-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Hafnia paralvei"
        ],
        "sample_taxid": [
            "546367"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Alfacada pond, Ebro delta, Tarragona"
        ],
        "sample_host_location_id": [],
        "data_size": "1.304 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.92,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4522040",
        "Number of Sequences": "204",
        "Longest Sequences (bp)": "147474",
        "N50 (bp)": "32956",
        "Gap Ratio (%)": "0.116629",
        "GCcontent (%)": "48.2",
        "Number of CDSs": "4049",
        "Average Protein Length": "306.3",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Hafnia paralvei",
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                "accession": "GCA_023698525.1",
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                "species_taxid": 546367,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hafnia paralvei",
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                "accession": "GCA_001655005.1",
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                "species_taxid": 546367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0332,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Obesumbacterium proteus",
                "strain": "strain=DSM 2777",
                "accession": "GCA_001586165.1",
                "taxid": 82983,
                "species_taxid": 82983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9413,
                "matched_fragments": 1017,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Obesumbacterium proteus",
                "strain": "strain=ATCC 12841",
                "accession": "GCA_001655035.1",
                "taxid": 82983,
                "species_taxid": 82983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9356,
                "matched_fragments": 998,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hafnia alvei",
                "strain": "strain=ATCC 13337",
                "accession": "GCA_003668715.1",
                "taxid": 569,
                "species_taxid": 569,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9197,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hafnia alvei",
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                "taxid": 569,
                "species_taxid": 569,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8709,
                "matched_fragments": 1013,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia aldovae",
                "strain": "strain=IP06005",
                "accession": "GCA_001091225.1",
                "taxid": 29483,
                "species_taxid": 29483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3764,
                "matched_fragments": 235,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1258,
                "matched_fragments": 268,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella ecdela",
                "strain": "strain=FRB 231",
                "accession": "GCA_019049625.1",
                "taxid": 2816250,
                "species_taxid": 2816250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.088,
                "matched_fragments": 273,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
                "strain": "strain=FC061912-K",
                "accession": "GCA_019049655.1",
                "taxid": 2816249,
                "species_taxid": 2816249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9384,
                "matched_fragments": 269,
                "total_fragments": 1412,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.92,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
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                "accession": "GCF_001655005.1",
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                "matched_fragments": 1267,
                "total_fragments": 1412,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Hafnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
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                "status": "conclusive"
            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Hafnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000735375.1",
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                "matched_fragments": 1012,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Hafnia",
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                "num_clustered_genomes": 31,
                "status": "-"
            },
            {
                "accession": "GCF_900095695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Hafnia",
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                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001112925.1",
                "gtdb_species": "s__Yersinia nurmii",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003363015.1",
                "gtdb_species": "s__Enterobacillus tribolii",
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                "matched_fragments": 347,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_017832355.1",
                "gtdb_species": "s__Serratia sp017832355",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_900635475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
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            },
            {
                "accession": "GCF_900079995.3",
                "gtdb_species": "s__Citrobacter europaeus",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter",
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                "mean_intra_species_ani": "99.13",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 21,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 32.0,
        "optimum_tmp": 32.5,
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        "genome_size": 4753978.0,
        "gc_content": 48.2,
        "coding_genes": 3968.0,
        "rRNA16S_genes": 7.667,
        "tRNA_genes": 88.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Enterobacteriaceae",
        "g__Hafnia",
        "s__Hafnia paralvei"
    ],
    "_genome_taxon": [
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        "paralvei",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Hafnia",
        "s__Hafnia paralvei",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Hafnia",
        "Hafnia",
        "paralvei"
    ],
    "_meo": [
        {
            "id": "MEO_0000828",
            "label": "fish associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}