{ "type": "genome", "identifier": "GCA_002341985.1", "organism": "Leclercia sp. UBA2479", "title": "Leclercia sp. UBA2479", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002341985.1", "bioproject": "PRJNA348753", "biosample": "SAMN06452798", "wgs_master": "DDPB00000000.1", "refseq_category": "na", "taxid": "1946738", "species_taxid": "1946738", "organism_name": "Leclercia sp. UBA2479", "infraspecific_name": "", "isolate": "UBA2479", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/22", "asm_name": "ASM234198v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/341/985/GCA_002341985.1_ASM234198v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-22", "dateModified": "2017-09-22", "datePublished": "2017-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Leclercia sp. UBA2479" ], "sample_taxid": [ "1946738" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "1.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4336554", "Number of Sequences": "13", "Longest Sequences (bp)": "1336983", "N50 (bp)": "544513", "Gap Ratio (%)": "0.018540", "GCcontent (%)": "55.0", "Number of CDSs": "3990", "Average Protein Length": "323.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "1", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", 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"relation_to_type": "type", "validated": true, "ani": 84.6388, "matched_fragments": 1056, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=ATCC 23216", "accession": "GCA_000735515.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.312, "matched_fragments": 1102, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=FDAARGOS_1505", "accession": "GCA_020097395.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2831, "matched_fragments": 1135, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 84.2806, "matched_fragments": 1076, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=NBRC 102595", "accession": "GCA_001515505.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2675, "matched_fragments": 1116, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 84.233, "matched_fragments": 1017, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 84.1166, "matched_fragments": 1054, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 84.1021, "matched_fragments": 1048, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 84.1012, "matched_fragments": 1068, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.9599, "matched_fragments": 1036, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. steigerwaltii", "strain": "strain=DSM 16691", "accession": "GCA_001729725.1", "taxid": 299766, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.912, "matched_fragments": 1072, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hoffmannii", "strain": "strain=DSM 14563", "accession": "GCA_001729745.1", "taxid": 1812934, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.8722, "matched_fragments": 1054, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017348915.1", "gtdb_species": "s__UBA7405 sp000755535", "ani": 98.5982, "matched_fragments": 1344, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__UBA7405", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_002469605.1", "gtdb_species": "s__UBA7405 sp002469605", "ani": 85.5498, "matched_fragments": 793, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__UBA7405", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019047785.1", "gtdb_species": "s__Enterobacter cancerogenus", "ani": 84.7446, "matched_fragments": 1051, "total_fragments": 1440, 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