{
    "type": "genome",
    "identifier": "GCA_002367005.1",
    "organism": "Bacteroidales bacterium UBA3053",
    "title": "Bacteroidales bacterium UBA3053",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002367005.1",
        "bioproject": "PRJNA348753",
        "biosample": "SAMN06454890",
        "wgs_master": "DFCN00000000.1",
        "refseq_category": "na",
        "taxid": "1950473",
        "species_taxid": "1950473",
        "organism_name": "Bacteroidales bacterium UBA3053",
        "infraspecific_name": "",
        "isolate": "UBA3053",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/26",
        "asm_name": "ASM236700v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/367/005/GCA_002367005.1_ASM236700v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-26",
    "dateModified": "2017-09-26",
    "datePublished": "2017-09-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidales bacterium UBA3053"
        ],
        "sample_taxid": [
            "1950473"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NULL"
        ],
        "sample_host_location_id": [],
        "data_size": "0.554 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 76.09,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1959368",
        "Number of Sequences": "109",
        "Longest Sequences (bp)": "75291",
        "N50 (bp)": "23868",
        "Gap Ratio (%)": "0.696245",
        "GCcontent (%)": "58.3",
        "Number of CDSs": "1558",
        "Average Protein Length": "365.5",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_025145845.1",
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                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.8608,
                "matched_fragments": 54,
                "total_fragments": 599,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_000210575.1",
                "taxid": 328814,
                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.8283,
                "matched_fragments": 56,
                "total_fragments": 599,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 76.09,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001602845.1",
                "gtdb_species": "s__Bact-11 sp001602845",
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                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017619655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002361615.1",
                "gtdb_species": "s__Bact-11 sp002361615",
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                "matched_fragments": 383,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_016290385.1",
                "gtdb_species": "s__Bact-11 sp016290385",
                "ani": 82.2601,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017447265.1",
                "gtdb_species": "s__Bact-11 sp017447265",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902784965.1",
                "gtdb_species": "s__Bact-11 sp902784965",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902778855.1",
                "gtdb_species": "s__Bact-11 sp902778855",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_902789445.1",
                "gtdb_species": "s__Bact-11 sp902789445",
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                "matched_fragments": 322,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Bact-11",
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            },
            {
                "accession": "GCA_017548335.1",
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            },
            {
                "accession": "GCA_001603505.1",
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            {
                "accession": "GCA_017509755.1",
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            {
                "accession": "GCA_017438265.1",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.217,
        "cell_length": 0.157,
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        "growth_tmp": 36.585,
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        "genome_size": 3658719.825,
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        "coding_genes": 3043.648,
        "rRNA16S_genes": 4.032,
        "tRNA_genes": 57.661,
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        "sporulation": 0.0,
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        "range_salinity": 0.0,
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        "mesophilic_range_tmp": 0.985,
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        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.024,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.024,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Bact-11",
        "s__Bact-11 sp001602845"
    ],
    "_genome_taxon": [
        "Bacteroidales",
        "bacterium",
        "UBA3053",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Bact-11",
        "s__Bact-11 sp001602845",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA932",
        "Bact-11",
        "Bact-11",
        "sp001602845"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}