{ "type": "genome", "identifier": "GCA_002404035.1", "organism": "Chloroflexi bacterium UBA4735", "title": "Chloroflexi bacterium UBA4735", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002404035.1", "bioproject": "PRJNA348753", "biosample": "SAMN06455184", "wgs_master": "DHIX00000000.1", "refseq_category": "na", "taxid": "1947831", "species_taxid": "1947831", "organism_name": "Chloroflexi bacterium UBA4735", "infraspecific_name": "", "isolate": "UBA4735", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/28", "asm_name": "ASM240403v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/404/035/GCA_002404035.1_ASM240403v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-28", "dateModified": "2017-09-28", "datePublished": "2017-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexi bacterium UBA4735" ], "sample_taxid": [ "1947831" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Axel Heiberg Island,Nunavut" ], "sample_host_location_id": [], "data_size": "0.904 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3323190", "Number of Sequences": "82", "Longest Sequences (bp)": "311606", "N50 (bp)": "101394", "Gap Ratio (%)": "0.167580", "GCcontent (%)": "68.6", "Number of CDSs": "3451", "Average Protein Length": "285.1", "Coding Ratio (%)": "88.8", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gaiella occulta", "strain": "strain=F2-233", "accession": "GCA_003351045.1", "taxid": 1002870, "species_taxid": 1002870, "relation_to_type": "type", "validated": true, "ani": 75.0591, "matched_fragments": 107, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ulmi", "strain": "strain=CECT 5976", "accession": "GCA_011759705.1", "taxid": 179095, "species_taxid": 179095, "relation_to_type": "type", "validated": true, "ani": 74.9377, "matched_fragments": 89, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix ecbatanensis", "strain": "strain=DSM 45486", "accession": "GCA_014205015.1", "taxid": 1105145, "species_taxid": 1105145, "relation_to_type": "type", "validated": true, "ani": 74.9186, "matched_fragments": 90, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ulmi", "strain": "strain=JCM 14282", "accession": "GCA_013004565.1", "taxid": 179095, "species_taxid": 179095, "relation_to_type": "type", "validated": true, "ani": 74.9115, "matched_fragments": 88, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodnii", "strain": "strain=NBRC 100604", "accession": "GCA_001894925.1", "taxid": 38312, "species_taxid": 38312, "relation_to_type": "type", "validated": true, "ani": 74.9055, "matched_fragments": 83, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 74.8634, "matched_fragments": 201, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium stalagmiti", "strain": "strain=YC3-14", "accession": "GCA_013283745.1", "taxid": 2738988, "species_taxid": 2738988, "relation_to_type": "type", "validated": true, "ani": 74.856, "matched_fragments": 65, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 74.8305, "matched_fragments": 61, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_012910985.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.8119, "matched_fragments": 56, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.8119, "matched_fragments": 56, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria turfanensis", "strain": "strain=HO-9042", "accession": "GCA_001580365.1", "taxid": 388357, "species_taxid": 388357, "relation_to_type": "type", "validated": true, "ani": 74.789, "matched_fragments": 56, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, "relation_to_type": "type", "validated": true, "ani": 74.7717, "matched_fragments": 75, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria sediminis", "strain": "strain=JCM 17929", "accession": "GCA_009735315.1", "taxid": 1038857, "species_taxid": 1038857, "relation_to_type": "type", "validated": true, "ani": 74.6994, "matched_fragments": 66, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes consettensis", "strain": "strain=NBRC 14913", "accession": "GCA_018332715.1", "taxid": 113560, "species_taxid": 113560, "relation_to_type": "type", "validated": true, "ani": 74.6866, "matched_fragments": 109, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 74.6742, "matched_fragments": 71, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes humidus", "strain": "strain=NBRC 14915", "accession": "GCA_016862215.1", "taxid": 113566, "species_taxid": 113566, "relation_to_type": "type", "validated": true, "ani": 74.6416, "matched_fragments": 103, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002404155.1", "gtdb_species": "s__UBA4735 sp002404155", "ani": 99.9587, "matched_fragments": 1015, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__UBA4735", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_016194865.1", "gtdb_species": "s__JACQAT01 sp016194865", "ani": 78.5783, "matched_fragments": 225, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__JACQAT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016875795.1", "gtdb_species": "s__JACPOT01 sp016875795", "ani": 78.2558, "matched_fragments": 245, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__JACPOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883625.1", "gtdb_species": "s__3-1-20CM-2-70-9 sp001919195", "ani": 78.057, "matched_fragments": 376, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__3-1-20CM-2-70-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_005887995.1", "gtdb_species": "s__CF-39 sp005887995", "ani": 77.8439, "matched_fragments": 298, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__CF-39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_005882255.1", "gtdb_species": "s__CF-39 sp005882255", "ani": 77.8419, "matched_fragments": 286, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__CF-39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016183435.1", "gtdb_species": "s__JACPOT01 sp016183435", "ani": 77.8102, "matched_fragments": 258, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__JACPOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005889275.1", "gtdb_species": "s__3-1-20CM-2-70-9 sp005889275", "ani": 77.7814, "matched_fragments": 284, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__3-1-20CM-2-70-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001795345.1", "gtdb_species": "s__GWC2-70-10 sp001795345", "ani": 77.7187, "matched_fragments": 249, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__GWC2-70-10", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_005889445.1", "gtdb_species": "s__3-1-20CM-2-70-9 sp005889445", "ani": 77.6841, "matched_fragments": 212, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__3-1-20CM-2-70-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013695575.1", "gtdb_species": "s__JACDAF01 sp013695575", "ani": 77.6251, "matched_fragments": 217, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__JACDAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005889075.1", "gtdb_species": "s__3-1-20CM-2-70-9 sp005889075", "ani": 77.4989, "matched_fragments": 270, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__3-1-20CM-2-70-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016191385.1", "gtdb_species": "s__JACPOT01 sp016191385", "ani": 77.4352, "matched_fragments": 170, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__JACPOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016875665.1", "gtdb_species": "s__SHYN01 sp016875665", "ani": 77.4174, "matched_fragments": 136, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__SHYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016191435.1", "gtdb_species": "s__JACPOQ01 sp016191435", "ani": 75.1483, "matched_fragments": 54, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__JACPOQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016866775.1", "gtdb_species": "s__VGLJ01 sp016866775", "ani": 74.9319, "matched_fragments": 128, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__VGLJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001014645.1", "gtdb_species": "s__Luteimonas sp001014645", "ani": 74.923, "matched_fragments": 79, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018122625.2", "gtdb_species": "s__Coralloluteibacterium stylophorae", "ani": 74.7894, "matched_fragments": 76, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Coralloluteibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__P2-11E", "f__P2-11E", "g__UBA4735", "s__UBA4735 sp002404155" ], "_genome_taxon": [ "Chloroflexi", "bacterium", "UBA4735", "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__P2-11E", "f__P2-11E", "g__UBA4735", "s__UBA4735 sp002404155", "Bacteria", "Chloroflexota", "Limnocylindria", "P2-11E", "P2-11E", "UBA4735", "UBA4735", "sp002404155" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }